View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6229_low_4 (Length: 335)
Name: NF6229_low_4
Description: NF6229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6229_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 2 - 319
Target Start/End: Original strand, 49921770 - 49922087
Alignment:
| Q |
2 |
acgcaactcgcaaaccatgataaagagccagcaactcagcctgaagaatggatgaaaaaccaatgtttcctccaaagccatatatccacgacccatcatg |
101 |
Q |
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| T |
49921770 |
acgcaactcacaaaccatgataaagagccagcaactcagcctgaagaatggatgaaaaaccaatgtttcctccaaagccatatatccacgacccatcatg |
49921869 |
T |
|
| Q |
102 |
tcttcgtaaaactcctccaaagccagagatgcctgggttaccgaagctgctaccatcaacgttaagtaccgtagccgagctttccaccggatgccaagaa |
201 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49921870 |
tcttcgtaaaacgcctccaaagccagagatgcctgggttaccgaagctactaccatcaacgttaagtaccgtagccgagctttccaccggatgccaagaa |
49921969 |
T |
|
| Q |
202 |
gtccaccgtccaatttcatttgttggaacagtaacagtaaacatcttatgaatgagagctgagagcttatacacctccatctttagctgatagatagtaa |
301 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49921970 |
gtccaccgtccaatttcatttgctggaacagtaacagtaaatatcttatgaatgagagctgagagcttatacacctccatctttagctgatagatagtaa |
49922069 |
T |
|
| Q |
302 |
tgtgttcatcctccatac |
319 |
Q |
| |
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|||||||||||||||||| |
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| T |
49922070 |
tgtgttcatcctccatac |
49922087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 13799688 - 13799369
Alignment:
| Q |
1 |
cacgcaactcgcaaaccatgataaagagccagcaactcagcctgaagaatggatgaaaaaccaatgtttcctccaaagccatatatccacgacccatcat |
100 |
Q |
| |
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||||||||||| || |||||||||| |||||||||||| ||||||||||||||| || |||||| || |||||||| || |||||||| || ||||||| |
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| T |
13799688 |
cacgcaactcgtaacccatgataaatagccagcaactccacctgaagaatggatgcaataccaattttccctccaaacccgtatatccaagagccatcat |
13799589 |
T |
|
| Q |
101 |
gtcttcgtaaaactcctccaaag-ccagagatgcctgggttaccgaagctgctaccatcaacgttaagtaccgtagccgagctttccaccggatgccaag |
199 |
Q |
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| |||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| ||| ||||||| |
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| T |
13799588 |
gccttcttaaaactcctaaaaaaaccggagatgcctgggttaccgaagctgctaccatcaacattaagcaccgtagccgagctctccatcgggtgccaag |
13799489 |
T |
|
| Q |
200 |
aagtccaccgtccaatttcatttgttggaacagtaacagtaaacatcttatgaatgagagctgagagcttatacacctccatctttagctgatagatagt |
299 |
Q |
| |
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||||||| |||||| |||| |||| ||| |||||||||| | | || |||||||| | ||| | || ||||||||||||||||||||||| ||||| |
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| T |
13799488 |
aagtccatcgtccactttcgtttgccggacaagtaacagtacatgttttgtgaatgagggttgaaaatttgtacacctccatctttagctgataaatagt |
13799389 |
T |
|
| Q |
300 |
aatgtgttcatcctccatac |
319 |
Q |
| |
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|||||||||||||||||||| |
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| T |
13799388 |
aatgtgttcatcctccatac |
13799369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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