View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6229_low_5 (Length: 288)
Name: NF6229_low_5
Description: NF6229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6229_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 1684617 - 1684876
Alignment:
| Q |
11 |
cacagacaataccaacaattaaagacctgccggtagtgccatgaaataccaacattgttatcagaacaatggcagcaaagaaaatggcctcaaggagaag |
110 |
Q |
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| T |
1684617 |
cacaaacaataccaacaattaaagacctgccggtagtgccatgaaataccaacattgttatcagaacaatggcagcaaagaaaatagcctcaaggagaag |
1684716 |
T |
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| Q |
111 |
ccaaaaccccatatccttctgaaattagag--nnnnnnngtagtgagtagcagaagaatataaatggttacattaacaagtgacaatatttatcatttta |
208 |
Q |
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| T |
1684717 |
ccaaaaccccatatccttctgaaattagagaaaaaaaaagtagtgagtagcagaagaatataaatggttacattaacaagtgacaatatttatcatttta |
1684816 |
T |
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| Q |
209 |
cacaaccatctcatctcttaagtataaagataaaacttatgcgaataataacacatcatgaactt |
273 |
Q |
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| T |
1684817 |
cacaac-----catctcttaagtataaagataaaacttatgcgaataataacacatcatgaactt |
1684876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 1695051 - 1695110
Alignment:
| Q |
22 |
ccaacaattaaagacctgccggtagtgccatgaaataccaacattgttatcagaacaatg |
81 |
Q |
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| T |
1695051 |
ccaacaattaaagacctcttggtagtgccatgtaatgccaacattgttatcagaacaatg |
1695110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 1700179 - 1700245
Alignment:
| Q |
44 |
tagtgccatgaaataccaacattgttatcagaacaatggcagcaaagaaaatggcctcaaggagaag |
110 |
Q |
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|||||||||||| | ||||||||||||| ||||||||| ||||||||||||| ||||| | |||||| |
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| T |
1700179 |
tagtgccatgaagtgccaacattgttattagaacaatgacagcaaagaaaatagcctcgatgagaag |
1700245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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