View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6230_low_1 (Length: 604)
Name: NF6230_low_1
Description: NF6230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6230_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 35 - 604
Target Start/End: Complemental strand, 8188402 - 8187833
Alignment:
| Q |
35 |
aggttttcattttcatgagatgaaagaccgtcacgttctccaccctgtaatacagctgctagaaattttttatactcttcttcatcatcgacattttgaa |
134 |
Q |
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| T |
8188402 |
aggttttcattttcatgagatgaaagaccgtcacgttctccaccctgtaatacagctgctagaaattttttatactcttcttcatcatcgacattttgaa |
8188303 |
T |
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| Q |
135 |
catcatcttcatcatcggtctcttgaagaaaggtctcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacgcatacaaatagcatc |
234 |
Q |
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| T |
8188302 |
catcatcttcatcatcagtctcttgaagaaaggtctcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacgcatacaaatagcatc |
8188203 |
T |
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| Q |
235 |
ctcagtatctatgtctatcactgggcttcggggtttcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccactaatcaagtcattcttc |
334 |
Q |
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| T |
8188202 |
ctcagtatctatgtctatcactgggcttcggggtttcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccactaatcaagtcattcttc |
8188103 |
T |
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| Q |
335 |
ttctccttatcaatctccaattgagatatcatacctgccgcttctaaaacaatttcctcctcgccatgttcagaatctactgcactacggatttgctcat |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8188102 |
ttctccttatcaatctccaattgagatatcatacctgccgcttctaaaacaatttcctcctcgccatgttcagaatctactgcactacagatttgctcat |
8188003 |
T |
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| Q |
435 |
tatccgttatcttttccaaatctatatccatagatggcccactatctacaacattacgatccaatccatcaccttcagaactcaaacttgatgaagcatc |
534 |
Q |
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| T |
8188002 |
tatccgttatcttttccaaatctatatccatagatggcccactatctacaacattacgatccaatccatcaccttcagaactcaaacttgatgaagcatc |
8187903 |
T |
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| Q |
535 |
cgaaagtgtttcctttagaaacaaaggattaaagtctgcatcttcttcttcctcttcctcttcctcctct |
604 |
Q |
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| T |
8187902 |
tgaaagtgtttcctttagaaacaaaggattaaagtctgcatcttcttcttcctcttcctcttcctcctct |
8187833 |
T |
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