View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6230_low_3 (Length: 403)
Name: NF6230_low_3
Description: NF6230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6230_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 15864925 - 15865296
Alignment:
| Q |
15 |
acctgtgacgttgaggttgaaattcttttggtaggttcggactgcagattccaaggcctcgtcaaagtcatcggtgaaatttgacggcggcgcgttgggg |
114 |
Q |
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| T |
15864925 |
acctgtgatgttgaggttgaaattcttttggtaggttctgacggcggattctaaggcctcgtcgaagtcatcggtgaaatttgacggcggcccgttgggg |
15865024 |
T |
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| Q |
115 |
atgtaaccgaagtggttgaagtagtttttgagttttgacaaaccgtcgtaagttttgccacggctgcagccggtgaagtttttgtacccatcccacgcgc |
214 |
Q |
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| T |
15865025 |
atgtaaccgaagtggttgaagtagtttttgagttttgacaaaccgtcgtaagttttgccgcggctgcagccggtgaagtttttgtacccatcccacgcgc |
15865124 |
T |
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| Q |
215 |
ctggtggcgcgttgctagaattccatgctggcattgaagatggatcagggaagaaacgagctgaaactgaagttaatgtgatgctaattagtgttataga |
314 |
Q |
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| T |
15865125 |
ctggtggcgcgttgctagaattccatgcgggcattgaagatggatcagggaagaaacgagctgaaactgaagttaatgtgatgctaattagtgttatgta |
15865224 |
T |
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| Q |
315 |
gaatatgtgataataataacgttggttttgagtaatcatgttttcttaaggagaaatttgaatggaataagt |
386 |
Q |
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| T |
15865225 |
gaatatgtgataataataacgttggttttgagtaatcatgttttcttaaggagaaatttgaatggaataagt |
15865296 |
T |
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