View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6230_low_4 (Length: 299)
Name: NF6230_low_4
Description: NF6230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6230_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 42995755 - 42995503
Alignment:
| Q |
20 |
catggatcaccctggtgtttgttggtttgggaaaatttgcaatggttttgaaagacaggtttgggaaggttataaactgtcaacgccgctcgccgtgcca |
119 |
Q |
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| T |
42995755 |
catggatcaccctggtgtttgttggtttgggaaaatttgcaatggttttgaaagacaggtttgggaagtttatatattgtcaacgccgctcgccgtgccg |
42995656 |
T |
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| Q |
120 |
gtgctgatattgaaatcgtgaagaaacataatgctgcgacagacaaagctgcctctagcagcacttcattaaacactaagagccttgatgaggcttggtt |
219 |
Q |
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| T |
42995655 |
gtgccgatatcgaaaccgtgaagaaacataatgctgcgacagacaaagctgcttctagcagcacttcattaaacactaagaggcttgatgaggcttggtt |
42995556 |
T |
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| Q |
220 |
ttcatttgtcactaacatgtttgtgttaatttatgtgataggtcctttgatga |
272 |
Q |
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| T |
42995555 |
ttcatttgtcactaacatgtttgtgttaatttatgtgataggtcctttgatga |
42995503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 31042652 - 31042706
Alignment:
| Q |
147 |
ataatgctgcgacagacaaagctgcctctagcagcacttcattaaacactaagag |
201 |
Q |
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| T |
31042652 |
ataatgctgcaacaaacaaagctgcatctagcagcacttcattgaacactaagag |
31042706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 27354521 - 27354341
Alignment:
| Q |
20 |
catggatcaccctggtgtttgttggtttgggaaaatttgcaatggttttgaaagacaggtttgggaaggttataaactgtcaacgccgctcgccgtgcca |
119 |
Q |
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| T |
27354521 |
catggatcaccctggtgtttgttggtttgggaaaatttgcaatggttttgaaagacaggtttgggaaggttataaactgtcaacgccgctcgccgtgccg |
27354422 |
T |
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| Q |
120 |
gtgctgatattgaaatcgtgaagaaacataatgctgcgacagacaaagctgcctctagcagcacttcattaaacactaaga |
200 |
Q |
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| T |
27354421 |
gtgccgatattgaaaccgtgaagaaacataatgttgcgacagacaaagctgcctctaacaacacttcattaaacactaaga |
27354341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 35378233 - 35378168
Alignment:
| Q |
147 |
ataatgctgcgacagacaaagctgcctctagcagcacttcattaaacactaagagccttgatgagg |
212 |
Q |
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| T |
35378233 |
ataatgctgcgacaaacaaagctgcctctagcagcacttcattgaacactaagaggcttgatgagg |
35378168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 16981965 - 16982037
Alignment:
| Q |
20 |
catggatcaccctggtgtttgttggtttgggaaaatttgcaatggttttgaaagacaggtttgggaaggttat |
92 |
Q |
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| T |
16981965 |
catggatcaccctgatgtttgttggtttggggaaatttgcaatggttttgaaggacatgtttgggaaggttat |
16982037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 48846286 - 48846172
Alignment:
| Q |
97 |
tgtcaacgccgctcgccgtgccagtgctgatattgaaatcgtgaagaaacataatgctgcgacagacaaagctgcctctagcagcacttcattaaacact |
196 |
Q |
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| T |
48846286 |
tgtcaatgccgctcgccgtgctggtgccgatatcaaaaccatgaagaaa-atgatgttgcgacaaacaaagcttcctctagcagcacttcattgaacact |
48846188 |
T |
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| Q |
197 |
aagagccttgatgagg |
212 |
Q |
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| T |
48846187 |
aagaggcttgatgagg |
48846172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 7016232 - 7016344
Alignment:
| Q |
97 |
tgtcaacgccgctcgccgtgccagtgctgatattgaaatcgtgaagaaacataatgctgcgacagacaaagctgcctctagcagcacttcattaaacact |
196 |
Q |
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| T |
7016232 |
tgtcaatgctgctcgcggtgccggtgccgatatcaaaaccatgaagaaa-atgatgttgcgacaaacaaagcttcctctagcagcacttcattgaacact |
7016330 |
T |
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| Q |
197 |
aagagccttgatga |
210 |
Q |
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| T |
7016331 |
aagaggcttgatga |
7016344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 21005390 - 21005352
Alignment:
| Q |
54 |
atttgcaatggttttgaaagacaggtttgggaaggttat |
92 |
Q |
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|||||| ||||||||||||||||| |||||||||||||| |
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| T |
21005390 |
atttgctatggttttgaaagacagatttgggaaggttat |
21005352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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