View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6231_high_2 (Length: 327)
Name: NF6231_high_2
Description: NF6231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6231_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 15966762 - 15966935
Alignment:
| Q |
17 |
aatttttgaatgaatatatgtgtggaaggagctctatttataggcaacatgtatttcttcttcttcacataaccgcacgtgtggtgcgcacgaggcgatg |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15966762 |
aatttttgaatgaatatttgtgtggaaggagctctatttataggcaacatgcatttcttcttcttcacataaccgcacgtgtggtgcgcacgaggcgatg |
15966861 |
T |
|
| Q |
117 |
cgcggggcgcttggcagttgccaaagagcagatgctctctgccccatgcgcctggggcatgtgacctcaagtgt |
190 |
Q |
| |
|
||||||| || |||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15966862 |
cgcggggtgcatggcagctgtcaaagagcagatgctctctgccccatgcgcctggggcacgtgacctcaagtgt |
15966935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 209 - 316
Target Start/End: Original strand, 15966965 - 15967072
Alignment:
| Q |
209 |
accattgtttgagtattttccttctcaagactttttcttgggacttgagacaaaatttcctcaacttgtaatgtctacaaaacccaattgaaccttgatc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15966965 |
accattgtttgagtattttccttctcaacactttttcttgggacttgagacaaaattttctcaacttgtaatgtctacaaaacccaattgaaccttgatc |
15967064 |
T |
|
| Q |
309 |
atcttcat |
316 |
Q |
| |
|
||||||| |
|
|
| T |
15967065 |
ttcttcat |
15967072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 17041206 - 17041262
Alignment:
| Q |
260 |
aaaatttcctcaacttgtaatgtctacaaaacccaattgaaccttgatcatcttcat |
316 |
Q |
| |
|
||||||||| ||||||||||||||| |||| || |||| |||||||||||||||||| |
|
|
| T |
17041206 |
aaaatttccccaacttgtaatgtcttcaaatcctaattaaaccttgatcatcttcat |
17041262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 17044322 - 17044393
Alignment:
| Q |
243 |
ttcttgggacttgagacaaaatttcctcaacttgtaatgtctacaaaacccaattgaaccttgatcatcttc |
314 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||||||| |||| || |||| |||||||||||||||| |
|
|
| T |
17044322 |
ttcttgagacttggaacaaaatttctccaacttgtaatgtcttcaaatcctaattaaaccttgatcatcttc |
17044393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 24248336 - 24248432
Alignment:
| Q |
219 |
gagtattttccttctcaagactttttcttgggacttgagacaaaatttcctcaacttgtaatgtctacaaaacccaattgaaccttgatcatcttcat |
316 |
Q |
| |
|
|||| ||||||||||| ||||| || || |||||||| |||||||||| ||||||||||||||| |||| || || |||||||||| |||||||| |
|
|
| T |
24248336 |
gagtgttttccttctcc-gacttgttattaggacttgacacaaaatttctccaacttgtaatgtcttcaaacccttatagaaccttgataatcttcat |
24248432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 17033952 - 17034031
Alignment:
| Q |
237 |
gactttttcttgggacttgagacaaaatttcctcaacttgtaatgtctacaaaacccaattgaaccttgatcatcttcat |
316 |
Q |
| |
|
||||| |||||| || ||| ||||||||| | ||||||||||||||| ||| || |||||||| |||||||||||||| |
|
|
| T |
17033952 |
gacttgttcttgagaattgcaacaaaattttcccaacttgtaatgtctttaaagcctaattgaacattgatcatcttcat |
17034031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 18044456 - 18044501
Alignment:
| Q |
244 |
tcttgggacttgagacaaaatttcctcaacttgtaatgtctacaaa |
289 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||||||| |||| |
|
|
| T |
18044456 |
tcttggaactggagacagaatttcctcaacttgtaatgtcttcaaa |
18044501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 21690035 - 21690134
Alignment:
| Q |
216 |
tttgagtattttccttctcaagactttttcttgggacttgagacaaaatttcctcaacttgtaatgtctacaaaacccaattgaaccttgatcatcttca |
315 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||| |||| || | ||||| |||||||| |||||||| |||| || ||||||||||||||| |||||| |
|
|
| T |
21690035 |
tttgagtgttttccttctcc-gacttgttcttggaactttggatagaattttctcaacttataatgtcttcaaatcctaattgaaccttgatcctcttca |
21690133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 32854631 - 32854557
Alignment:
| Q |
209 |
accattgtttgagtattttccttctcaagactttttcttgggacttgagacaaaatttcctcaacttgtaatgtct |
284 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |||||| ||| |||||||||||||| ||| || |||||||| |
|
|
| T |
32854631 |
accattctttgagtattttccttctc-cgacttgttcttgagacctgagacaaaatttctccaatttataatgtct |
32854557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 24969010 - 24968966
Alignment:
| Q |
240 |
tttttcttgggacttgagacaaaatttcctcaacttgtaatgtct |
284 |
Q |
| |
|
||||||||| ||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
24969010 |
tttttcttgagacttgagatagaattttctcaacttgtaatgtct |
24968966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 14140689 - 14140629
Alignment:
| Q |
219 |
gagtattttccttctcaagactttttcttgggacttgagacaaaatttcctcaacttgtaat |
280 |
Q |
| |
|
|||||||||||||||| | | || |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
14140689 |
gagtattttccttctctaaa-ttggtcttgggacttgaggcaaaattttctcaacttgtaat |
14140629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 11222083 - 11222123
Alignment:
| Q |
249 |
ggacttgagacaaaatttcctcaacttgtaatgtctacaaa |
289 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| |||| |
|
|
| T |
11222083 |
ggacttgagacaaaattttcccaacttgtaatgtcttcaaa |
11222123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 16714434 - 16714467
Alignment:
| Q |
251 |
acttgagacaaaatttcctcaacttgtaatgtct |
284 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
16714434 |
acttgagataaaatttcctcaacttgtaatgtct |
16714467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University