View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6231_low_3 (Length: 260)
Name: NF6231_low_3
Description: NF6231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6231_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 36471897 - 36471679
Alignment:
| Q |
9 |
gattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttattgccttattaggaagagca |
108 |
Q |
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| T |
36471897 |
gattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttattgccttattaggaagagca |
36471798 |
T |
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| Q |
109 |
tcaattatcattttcatcctagccctcacagtttttgtgagtggtatatcactaggcaagtatcgttaagttatgcgttttgcattcatatatagattaa |
208 |
Q |
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| T |
36471797 |
tcaattatcattttcatcctagccctcacagtttttgtgagtggtatatcactaggcaagtatcgttaagttgtgtgttttgcatttatatatagattaa |
36471698 |
T |
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| Q |
209 |
gatgagatgacttaacttc |
227 |
Q |
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||||||||||||||||||| |
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| T |
36471697 |
gatgagatgacttaacttc |
36471679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 36462670 - 36462502
Alignment:
| Q |
9 |
gattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttattgccttattaggaagagca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
36462670 |
gattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttattgtcttattagggagagca |
36462571 |
T |
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| Q |
109 |
tcaattatcattttcatcctagccctcacagtttttgtgagtggtatatcactaggcaagtatcgttaa |
177 |
Q |
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| T |
36462570 |
tcaattatcattttcatcttagccctcacagtttttgtgagtggaatatcactaggtaagtgtcgttaa |
36462502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 34070747 - 34070801
Alignment:
| Q |
77 |
tgagaaagcttattgccttattaggaagagcatcaattatcattttcatcctagc |
131 |
Q |
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| T |
34070747 |
tgagaaaacttattgccttatcaggtaaagcttcgattatcattttcatcctagc |
34070801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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