View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6231_low_4 (Length: 251)
Name: NF6231_low_4
Description: NF6231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6231_low_4 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0929 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 6369729 - 6369970
Alignment:
| Q |
10 |
ataatactgggatttttattttctttctatttgacatattaatggatggattcttgcggggagaaatacttggttagacacaactctagataaaaaatat |
109 |
Q |
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| T |
6369729 |
ataatattgggatttttattttctttctatttaacatattaatggatggattcttgcggggagaaatacttagttagacacaactctagataaaaaatat |
6369828 |
T |
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| Q |
110 |
caatctatacgtaaatgaaaaggagttaaaagataaataatttaatcacaccacttatcgtttcttttaatttctatcatttatatgtatgtgtcaaaat |
209 |
Q |
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| T |
6369829 |
caatctatacgtaaatgaaaaggagttaaaagataaataatttagtcacaccacttatcgtttcttttaatttctatcatttatatgtatgtgtcaaaat |
6369928 |
T |
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| Q |
210 |
aaattttatttgagattgtgttcaaacaagagttcttctatt |
251 |
Q |
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| T |
6369929 |
aaattttatttgagattgtgttcaaacaagagttcttctatt |
6369970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 6378194 - 6378435
Alignment:
| Q |
10 |
ataatactgggatttttattttctttctatttgacatattaatggatggattcttgcggggagaaatacttggttagacacaactctagataaaaaatat |
109 |
Q |
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| T |
6378194 |
ataatattgggatttttattttctttctatttaacatattaatggatggattcttgcggggagaaatacttagttagacacaactctagataaaaaatat |
6378293 |
T |
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| Q |
110 |
caatctatacgtaaatgaaaaggagttaaaagataaataatttaatcacaccacttatcgtttcttttaatttctatcatttatatgtatgtgtcaaaat |
209 |
Q |
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| T |
6378294 |
caatctatacgtaaatgaaaaggagttaaaagataaataatttagtcacaccacttatcgtttcttttaatttctatcatttatatgtatgtgtcaaaat |
6378393 |
T |
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| Q |
210 |
aaattttatttgagattgtgttcaaacaagagttcttctatt |
251 |
Q |
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| T |
6378394 |
aaattttatttgagattgtgttcaaacaagagttcttctatt |
6378435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 845 - 918
Alignment:
| Q |
170 |
tttcttttaatttctatcatttatatgtatgtgtcaaaataaattttatttgagattgtgttcaaacaagagtt |
243 |
Q |
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| T |
845 |
tttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaaacaagagtt |
918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 690 - 779
Alignment:
| Q |
21 |
atttttattttctttctatttgacatattaatg-gatggattcttgcggggagaaatacttggttagacacaactctagataaaaaatat |
109 |
Q |
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| T |
690 |
atttttctgttctttctatttgacatattaatgtgatggattaatgcacagataaataatttgttagacacaacttcagataaaaaatat |
779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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