View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6232_high_1 (Length: 510)
Name: NF6232_high_1
Description: NF6232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6232_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 11150844 - 11150333
Alignment:
| Q |
1 |
tagataagtgatcaagtggggaaaagaagggcattgtatttcatcattttgagatagtttgtacaacacaatccaataacttagcaaaaccttttcatgt |
100 |
Q |
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| T |
11150844 |
tagataagtgatcaagtggggaaaagaagggcattgtatttcatcattttgagatagtttgtacaacacaatccaataacttagcaaaaccttttcattt |
11150745 |
T |
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| Q |
101 |
tttttatttgtccactttccagatgctgcaaaagtagtgactgagatggcagataacactgattttctttgactgatactcacatttgcttagccggggt |
200 |
Q |
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| T |
11150744 |
tttttatttatccactttccagatgctgcaaaagtagtgactgagatggcagataacactgattttctttgactgatactcacatttgcttagccggggt |
11150645 |
T |
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| Q |
201 |
cccttctcttttcgtatgtgaggtatgctctctatcaagatcttcttttcttctctcacacttttatattctccatatttgctcagttttatcctccagc |
300 |
Q |
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| T |
11150644 |
cccttctcttttcgtatgtgagctatgctctctatcaagatcttcttttcttctctcacacttttatattctccatatttgctcagatttatcctccagc |
11150545 |
T |
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| Q |
301 |
tggtatttgctatgaggattatatgtaatgttatattatgttttagtaatgtgagggatat--atatttgaaactaagtgaataatatcatataaagaga |
398 |
Q |
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| T |
11150544 |
tggtatttgctatgaggattatatgtaatgttatattatgttttagtaatgtgagggatatatatatttgaaactaagtgaataatatcatataaagaga |
11150445 |
T |
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| Q |
399 |
taaagacgaatttgattaccattttatcattctataaatgatatatgtaaggattatatatagatatatcacaagtgacaagcaagtactgtgtttgata |
498 |
Q |
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| T |
11150444 |
taaagacgaatttgattaccattttatcattctataaatgatatatgtaaggattatatatagatatatcacaagtgacaagtaagtactgtgtttgata |
11150345 |
T |
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| Q |
499 |
atccttgtttgc |
510 |
Q |
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| T |
11150344 |
atccttgtttgc |
11150333 |
T |
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