View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6232_high_6 (Length: 293)

Name: NF6232_high_6
Description: NF6232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6232_high_6
NF6232_high_6
[»] chr4 (1 HSPs)
chr4 (1-186)||(19021608-19021793)
[»] chr6 (3 HSPs)
chr6 (12-147)||(10801058-10801193)
chr6 (69-186)||(4020678-4020792)
chr6 (69-186)||(34654916-34655030)
[»] chr7 (2 HSPs)
chr7 (69-186)||(5050354-5050468)
chr7 (69-186)||(48347539-48347653)
[»] chr5 (2 HSPs)
chr5 (69-186)||(29980021-29980135)
chr5 (69-186)||(2965993-2966107)
[»] chr3 (3 HSPs)
chr3 (69-186)||(9570992-9571106)
chr3 (69-126)||(12831868-12831925)
chr3 (69-124)||(4503195-4503250)
[»] chr2 (2 HSPs)
chr2 (69-186)||(34835254-34835368)
chr2 (69-186)||(2163694-2163808)
[»] chr1 (1 HSPs)
chr1 (69-186)||(39053780-39053894)
[»] scaffold0012 (1 HSPs)
scaffold0012 (12-150)||(205627-205765)
[»] scaffold0045 (1 HSPs)
scaffold0045 (69-126)||(3248-3305)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 19021793 - 19021608
Alignment:
Q  1 acagactgttccatgaacacgttcaaaatatcttccatcattgattctcgttcgtctatggaagaactttgttgatattgttgatatgattcatagtcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19021793 acagactgttccatgaacacgttcaaaatatcttccatcattgattctcgttcgtctatggaagaactttgttgatattgttgatatgattcatagtcac 19021694  T
Q  101 atggagtatagaaattgttataaccacaatcatgcatggtttcgtttatgatggagagaatatgaaacatatataactaacaagaa 186  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19021693 atagagtatagaaattgttataaccacaatcatgcatggtttcgtttatgatggagagaatatgaaacatatataactaacaagaa 19021608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 10801193 - 10801058
Alignment:
Q  12 catgaacacgttcaaaatatcttccatcattgattctcgttcgtctatggaagaactttgttgatattgttgatatgattcatagtcatatggagtatag 111  Q
    ||||||||  |||||||||| ||||||| |||||  |||||| |||   |||| |  ||||||||||||||||||||||||||| ||  ||||||| |||    
T  10801193 catgaacaaattcaaaatattttccatctttgatattcgttcctcttcagaaggatgttgttgatattgttgatatgattcatactcgaatggagtgtag 10801094  T
Q  112 aaattgttataaccacaatcatgcatggtttcgttt 147  Q
    || ||||||||||||  ||||  |||| ||||||||    
T  10801093 aagttgttataaccatgatcagccatgatttcgttt 10801058  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 4020792 - 4020678
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataaccacaatcatgcatggtttcgtttatgatggagagaatatgaaac 168  Q
    ||||||||| ||||||||||||||||| ||   |||||| ||||| ||||||||||||  ||||  |||| |||| |||   ||| ||||||| ||||||    
T  4020792 ttgttgatactgttgatatgattcatattccagtggagtgtagaagttgttataaccatgatcagccatgatttcattt---atgtagagaatctgaaac 4020696  T
Q  169 atatataactaacaagaa 186  Q
      ||||||||||||||||    
T  4020695 ggatataactaacaagaa 4020678  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 34654916 - 34655030
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataaccacaatcatgcatggtttcgtttatgatggagagaatatgaaac 168  Q
    ||||||||| ||||||||||||||||| ||   |||||| ||||| ||||||||||||  ||||  |||| |||| |||   ||| ||||||| ||||||    
T  34654916 ttgttgatactgttgatatgattcatattccagtggagtgtagaagttgttataaccatgatcagccatgatttcattt---atgtagagaatctgaaac 34655012  T
Q  169 atatataactaacaagaa 186  Q
      ||||||||||||||||    
T  34655013 ggatataactaacaagaa 34655030  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 5050468 - 5050354
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataaccacaatcatgcatggtttcgtttatgatggagagaatatgaaac 168  Q
    ||||||||| ||||||||||||||||| ||   |||||| ||||| ||||||||||||  ||||  |||| |||| |||   ||| ||||||| ||||||    
T  5050468 ttgttgatactgttgatatgattcatattccagtggagtgtagaagttgttataaccatgatcagccatgatttcattt---atgtagagaatctgaaac 5050372  T
Q  169 atatataactaacaagaa 186  Q
      ||||||||||||||||    
T  5050371 ggatataactaacaagaa 5050354  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 48347653 - 48347539
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataaccacaatcatgcatggtttcgtttatgatggagagaatatgaaac 168  Q
    ||||||||| ||||||||||||||||| ||  ||||||| ||||| ||||||||||||  ||||  |||| || | |||   ||| ||||||| ||||||    
T  48347653 ttgttgatactgttgatatgattcatactccaatggagtgtagaagttgttataaccatgatcagccatgattgcattt---atgtagagaatctgaaac 48347557  T
Q  169 atatataactaacaagaa 186  Q
      ||||||||||||||||    
T  48347556 ggatataactaacaagaa 48347539  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 29980021 - 29980135
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataaccacaatcatgcatggtttcgtttatgatggagagaatatgaaac 168  Q
    ||||||||| ||||||||||||||||| ||  ||||||| ||||| ||||||||||||  ||||  |||| || | |||   ||| ||||||| ||||||    
T  29980021 ttgttgatactgttgatatgattcatactccaatggagtgtagaagttgttataaccatgatcagccatgattgcattt---atgtagagaatctgaaac 29980117  T
Q  169 atatataactaacaagaa 186  Q
      ||||||||||||||||    
T  29980118 ggatataactaacaagaa 29980135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 2965993 - 2966107
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataaccacaatcatgcatggtttcgtttatgatggagagaatatgaaac 168  Q
    ||||||||| ||||||||||||||||| ||  ||| ||| ||||| ||||||||||||  ||||  |||| || | |||   ||| ||||||| ||||||    
T  2965993 ttgttgatactgttgatatgattcatactccaatgcagtgtagaagttgttataaccatgatcagccatgattgcattt---atgtagagaatctgaaac 2966089  T
Q  169 atatataactaacaagaa 186  Q
      ||||||||||||||||    
T  2966090 ggatataactaacaagaa 2966107  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 9571106 - 9570992
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataaccacaatcatgcatggtttcgtttatgatggagagaatatgaaac 168  Q
    ||||||||| ||||||||||||||||| ||   |||||| ||||| ||||||||||||  ||||  |||| |||| |||   ||| ||||||| ||||||    
T  9571106 ttgttgatactgttgatatgattcatattccagtggagtgtagaagttgttataaccatgatcagccatgatttcattt---atgtagagaatctgaaac 9571010  T
Q  169 atatataactaacaagaa 186  Q
      ||||||||||||||||    
T  9571009 ggatataactaacaagaa 9570992  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 12831868 - 12831925
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataacca 126  Q
    ||||||||| ||| ||||||||||||| ||||||||| |||| || ||||||||||||    
T  12831868 ttgttgataatgtggatatgattcatactcatatggaatataaaagttgttataacca 12831925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 4503195 - 4503250
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataac 124  Q
    ||||||||| ||||||||||||||||| ||  ||||||| ||||| ||||||||||    
T  4503195 ttgttgatactgttgatatgattcatactcgaatggagtgtagaagttgttataac 4503250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 34835368 - 34835254
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataaccacaatcatgcatggtttcgtttatgatggagagaatatgaaac 168  Q
    ||||||||| ||||||||||||||||| ||   |||||| ||||| ||||||||||||  ||||  |||| |||| |||   ||| ||||||| ||||||    
T  34835368 ttgttgatactgttgatatgattcatattccagtggagtgtagaagttgttataaccatgatcagccatgatttcattt---atgtagagaatctgaaac 34835272  T
Q  169 atatataactaacaagaa 186  Q
      ||||||||||||||||    
T  34835271 ggatataactaacaagaa 34835254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 2163694 - 2163808
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataaccacaatcatgcatggtttcgtttatgatggagagaatatgaaac 168  Q
    ||||||||| ||||||||||||||||| ||   |||||| ||||| ||||||||||||  ||||  |||  |||| |||   ||| ||||||| ||||||    
T  2163694 ttgttgatactgttgatatgattcatattccagtggagtgtagaagttgttataaccatgatcaaccataatttcattt---atgtagagaatctgaaac 2163790  T
Q  169 atatataactaacaagaa 186  Q
      ||||||||||||||||    
T  2163791 ggatataactaacaagaa 2163808  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 39053894 - 39053780
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataaccacaatcatgcatggtttcgtttatgatggagagaatatgaaac 168  Q
    ||||||||| ||||||||||||||||| ||  ||||||| ||||| ||||||||||||  ||||  |||| || | |||   ||| ||||||| ||||||    
T  39053894 ttgttgatactgttgatatgattcatactccaatggagtgtagaagttgttataaccatgatcagccatgattgcattt---atgtagagaatctgaaac 39053798  T
Q  169 atatataactaacaagaa 186  Q
      ||||||||||||||||    
T  39053797 ggatataactaacaagaa 39053780  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 205627 - 205765
Alignment:
Q  12 catgaacacgttcaaaatatcttccatcattgattctcgttcgtctatggaagaactttgttgatattgttgatatgattcatagtcatatggagtatag 111  Q
    ||||||||  |||||||||| |||||||  ||||  |||||| |||   |||| |  ||||||||| ||||||||||| ||||| |   ||||||| |||    
T  205627 catgaacagattcaaaatattttccatctatgatattcgttcatcttcagaaggatgttgttgatactgttgatatgactcatacttgaatggagtgtag 205726  T
Q  112 aaattgttataaccacaatcatgcatggtttcgtttatg 150  Q
    || ||||| ||||||  ||||| |||| |||||||||||    
T  205727 aagttgttctaaccatgatcatccatgatttcgtttatg 205765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 3305 - 3248
Alignment:
Q  69 ttgttgatattgttgatatgattcatagtcatatggagtatagaaattgttataacca 126  Q
    ||||||||| | ||||||||||||||| ||  ||||||| ||||| ||||||||||||    
T  3305 ttgttgatactattgatatgattcatactccaatggagtgtagaagttgttataacca 3248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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