View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6232_low_13 (Length: 233)

Name: NF6232_low_13
Description: NF6232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6232_low_13
NF6232_low_13
[»] chr4 (3 HSPs)
chr4 (12-224)||(41286571-41286780)
chr4 (14-219)||(1556787-1556991)
chr4 (153-219)||(50544881-50544946)
[»] chr1 (1 HSPs)
chr1 (14-219)||(48478360-48478564)
[»] chr7 (2 HSPs)
chr7 (14-91)||(9965971-9966048)
chr7 (143-216)||(9966059-9966131)
[»] chr6 (2 HSPs)
chr6 (16-201)||(11347761-11347945)
chr6 (169-215)||(10414687-10414733)
[»] chr5 (1 HSPs)
chr5 (14-127)||(36343581-36343693)
[»] chr2 (2 HSPs)
chr2 (15-91)||(33978989-33979065)
chr2 (150-224)||(33979107-33979180)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 41286780 - 41286571
Alignment:
Q  12 agaatcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatactagtatctgcttggaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||    
T  41286780 agaatcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatatcattatctgcttggaaa 41286681  T
Q  112 aggaacaaatgcaaatattagaaatgaggtatgatgggaacctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaactctcgtggagg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||  ||||||| ||||||    
T  41286680 aggaacaaatgcaaatattagaaatgaggtatgatgggaacctccacaaccaggtctttgtgaaattgaatgt---tggaagttgtaactctcatggagg 41286584  T
Q  212 gattggtgatgat 224  Q
    |||||||||||||    
T  41286583 gattggtgatgat 41286571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 1556991 - 1556787
Alignment:
Q  14 aatcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatactagtatctgcttggaaaag 113  Q
    ||||||||||||||||||| |||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||| |  | ||||| ||||||||||    
T  1556991 aatcataggatcctaggtgacaaccaatggaagaagtatgatgtgcttaggtacattcatactttgcatgaggatatagatcattatctccttggaaaag 1556892  T
Q  114 gaacaaatgcaaatattagaaatgaggtatgatgggaacctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaactctcgtggaggga 213  Q
    ||||| |||||||||||||||| |||||  ||||||||||||||||| |||||| |||||||||||||||| |||||||||| ||||||| |||||||||    
T  1556891 gaacatatgcaaatattagaaaagaggtgagatgggaacctccacaaccaggtc-ttgtgaaattgaatgtggatggaagttgcaactctggtggaggga 1556793  T
Q  214 ttggtg 219  Q
    ||||||    
T  1556792 ttggtg 1556787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 50544946 - 50544881
Alignment:
Q  153 ctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaactctcgtggagggattggtg 219  Q
    |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50544946 ctccacaaccaggtctt-gtgaaattgaatgttgatggaagttgcaactctcgtggagggattggtg 50544881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 48478360 - 48478564
Alignment:
Q  14 aatcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatactagtatctgcttggaaaag 113  Q
    ||||||||||||||||||| |||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||| |  | ||||| || || ||||    
T  48478360 aatcataggatcctaggtgacaaccaatggaagaagtatgatgtgcttaggtacattcatactttgcatgaggatatagatcattatctcctggggaaag 48478459  T
Q  114 gaacaaatgcaaatattagaaatgaggtatgatgggaacctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaactctcgtggaggga 213  Q
    ||||| ||||||| |||||||| |||||  ||||||||||| ||||| |||||| |||||||||||||||| |||||||||| |||||||| ||||||||    
T  48478460 gaacatatgcaaagattagaaaagaggtgcgatgggaaccttcacaaccaggtc-ttgtgaaattgaatgtggatggaagttgcaactctcatggaggga 48478558  T
Q  214 ttggtg 219  Q
    ||||||    
T  48478559 ttggtg 48478564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 9965971 - 9966048
Alignment:
Q  14 aatcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatata 91  Q
    ||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||    
T  9965971 aatcataggatcctaggtgacaaccaatggaagaagtatgatgtgcttagatacattcatactttgcatgaggatata 9966048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 9966059 - 9966131
Alignment:
Q  143 tgatgggaacctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaactctcgtggagggattg 216  Q
    |||| |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  9966059 tgataggaacctccataaccaggtctt-gtgaaattgaatgttgatggaagttacaactctcgtggaaggattg 9966131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 11347945 - 11347761
Alignment:
Q  16 tcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatactagtatctgcttggaaaagga 115  Q
    |||||| |||||||||| |||||| |||||||| ||| |  | ||||||||||||||||| |||||| |  ||||| |  |  |||||||||  ||||||    
T  11347945 tcatagaatcctaggtgacaaccaatggaagaagtataatatacttagatacattcatacattgcattagaatatagatcatcatctgcttgacaaagga 11347846  T
Q  116 acaaatgcaaatattagaaatgaggtatgatgggaacctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaact 201  Q
    ||||||   || |||||||| |||||  |||||  ||||||||||  ||||||| ||||||| ||||||||||||||||| |||||    
T  11347845 acaaataataagattagaaaggaggtgcgatggccacctccacaacaaggtctt-gtgaaatcgaatgttgatggaagttgcaact 11347761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 10414687 - 10414733
Alignment:
Q  169 ttgtgaaattgaatgttgatggaagttacaactctcgtggagggatt 215  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  10414687 ttgtgaaattgaatgttgatggaagttgcaactctcgtggagggatt 10414733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 36343693 - 36343581
Alignment:
Q  14 aatcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatactagtatctgcttggaaaag 113  Q
    ||||||||||||||||||| ||| || || ||||| ||||| |||||| | ||||||||||| |||| ||| |||||| |  | ||||||||||| ||||    
T  36343693 aatcataggatcctaggtgacaatcaatg-aagaagtatgatgtgctttggtacattcatacgttgcgtgaggatataaatcattatctgcttggcaaag 36343595  T
Q  114 gaacaaatgcaaat 127  Q
    ||||||||||||||    
T  36343594 gaacaaatgcaaat 36343581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 33978989 - 33979065
Alignment:
Q  15 atcataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatata 91  Q
    |||||||||||||| ||| ||  || |||||||| ||||| ||||||||||||||||||||||| ||||| ||||||    
T  33978989 atcataggatcctaagtgacattcaatggaagaaatatgatgtgcttagatacattcatacttttcatgaggatata 33979065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 33979107 - 33979180
Alignment:
Q  150 aacctccacaatcaggtctttgtgaaattgaatgttgatggaagttacaactctcgtggagggattggtgatgat 224  Q
    |||||||||||  ||||||| || |||||||||||||||||||||| ||||||| ||||||||||| | ||||||    
T  33979107 aacctccacaactaggtctt-gtaaaattgaatgttgatggaagttgcaactcttgtggagggattagggatgat 33979180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University