View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6232_low_16 (Length: 211)
Name: NF6232_low_16
Description: NF6232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6232_low_16 |
 | |
|
| [»] scaffold0436 (1 HSPs) |
| | |
|
| [»] scaffold0149 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0670 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 23844844 - 23844676
Alignment:
| Q |
34 |
gatgaagtgtgtcactaggagtaaaacacgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgag |
133 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23844844 |
gatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgag |
23844745 |
T |
|
| Q |
134 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23844744 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatgatgt |
23844676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 23210823 - 23210991
Alignment:
| Q |
34 |
gatgaagtgtgtcactaggagtaaaacacgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgag |
133 |
Q |
| |
|
||||||||||||||| |||||||||| | | |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
23210823 |
gatgaagtgtgtcacaaggagtaaaagaagaagagaatgaaaattaaactaatggtgggtgtaagatttagatgtgatgtgaatatgacaaaattatgag |
23210922 |
T |
|
| Q |
134 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23210923 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatgatgt |
23210991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 24431506 - 24431674
Alignment:
| Q |
34 |
gatgaagtgtgtcactaggagtaaaacacgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgag |
133 |
Q |
| |
|
|||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
24431506 |
gatgaaatatgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagaattagatatgatgtgaatatgacaaaattatgag |
24431605 |
T |
|
| Q |
134 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
24431606 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacataagatgatgatgt |
24431674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 913 - 1081
Alignment:
| Q |
34 |
gatgaagtgtgtcactaggagtaaaacacgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgag |
133 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
913 |
gatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggtgggtgtaagatttatatatgatgtgaatatgccaaaattatgag |
1012 |
T |
|
| Q |
134 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatgt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1013 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatgt |
1081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 32410549 - 32410381
Alignment:
| Q |
34 |
gatgaagtgtgtcactaggagtaaaacacgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgag |
133 |
Q |
| |
|
||||||||||| ||| |||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32410549 |
gatgaagtgtgccaccaggagtaaaagatgcagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattatgag |
32410450 |
T |
|
| Q |
134 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32410449 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatgatgt |
32410381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 23844918 - 23845086
Alignment:
| Q |
34 |
gatgaagtgtgtcactaggagtaaaacacgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgag |
133 |
Q |
| |
|
|||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23844918 |
gatgaagtgtgtcagtgggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattatgag |
23845017 |
T |
|
| Q |
134 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatgt |
202 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
23845018 |
ttagacataggtagacgaatatatggtgtaaaataattatgagttgctaatgacgtaagatgatgatgt |
23845086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 18544655 - 18544742
Alignment:
| Q |
115 |
aatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatgt |
202 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18544655 |
aatatgacaaaattatgagttagtcataagtagacaaatatatgatgtaaattaatgatgagttgctaatgacgtaagatgatgatgt |
18544742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 12057046 - 12056879
Alignment:
| Q |
34 |
gatgaagtgtgtcactaggagtaaaacacgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgag |
133 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
12057046 |
gatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagatttagatat-atgtgaatatgacaaaattatgag |
12056948 |
T |
|
| Q |
134 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatgt |
202 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
12056947 |
ttagacataagtagacaaatatatggtgtaaaataatgatgaattgctaatgacgtaagatgatgatgt |
12056879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 13296298 - 13296217
Alignment:
| Q |
118 |
atgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatga |
199 |
Q |
| |
|
||||||| || |||| |||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||| |||| |
|
|
| T |
13296298 |
atgacaagatgatgacttagacttaagtagacgaatatatggtgtaagttgatgatgagttgctaatgacgtaagataatga |
13296217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 36748 - 36916
Alignment:
| Q |
34 |
gatgaagtgtgtcactaggagtaaaacacgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgag |
133 |
Q |
| |
|
|||||||| |||||||| |||||||| | | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36748 |
gatgaagtatgtcactatgagtaaaatatgcagagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattatgag |
36847 |
T |
|
| Q |
134 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
36848 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatgatgt |
36916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 24495427 - 24495259
Alignment:
| Q |
34 |
gatgaagtgtgtcactaggagtaaaacacgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgag |
133 |
Q |
| |
|
|||||||| ||||||||||||||||| | | |||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
24495427 |
gatgaagtatgtcactaggagtaaaagatgctgagaatgaaaatcaaactaatggtgggtgtaagatttaaatatgatgtgaatatgacaaaattatgag |
24495328 |
T |
|
| Q |
134 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
24495327 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatgatgt |
24495259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 23450314 - 23450145
Alignment:
| Q |
34 |
gatgaagtgtgtcactaggagtaaaacacgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgag |
133 |
Q |
| |
|
|||||||| |||||||| |||||||| | | | |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
23450314 |
gatgaagtatgtcactaagagtaaaaaatgcaaagaatgaaaattaaactaatggtgggtgtaagatttagatatgacgtgaatatgacaaaattaagag |
23450215 |
T |
|
| Q |
134 |
ttagacataagtagacgaatatatggtgt-aaaataatgatgagtcgctaatgacgtaagatgatgatgt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23450214 |
ttagacataagtagacgaatatatggtgtaaaaataatgatgagttgctaatgacgtaagatgatgatgt |
23450145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 16478335 - 16478173
Alignment:
| Q |
38 |
aagtgtgtcactaggagtaaaacacgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgagttag |
137 |
Q |
| |
|
|||| ||||||||||||||||| | | |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
16478335 |
aagtatgtcactaggagtaaaatatgcagagaatgaaaattgaactaatggtgggtgtaagatttagatatgatgttaatatgacaa--ttatgagttag |
16478238 |
T |
|
| Q |
138 |
acataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16478237 |
acataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatgatgt |
16478173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 42516 - 42597
Alignment:
| Q |
118 |
atgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatga |
199 |
Q |
| |
|
||||||| || |||| |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |
|
|
| T |
42516 |
atgacaagatgatgacttagacttaagtagacgaatatatggtgtaaattaatgatgagttgctaatgacgtaagataatga |
42597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 12223 - 12386
Alignment:
| Q |
34 |
gatgaagtgtgtcactaggagtaaaacacgtagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgag |
133 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12223 |
gatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaactaaactaatggtgggtgaacgatttagatatgatgtgaatatgacaaaattatgag |
12322 |
T |
|
| Q |
134 |
ttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgat |
197 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
12323 |
ttagaaatgagtagacgaatatatggtataaaataatgatgagtttctaatgacgtaagatgat |
12386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0670 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0670
Description:
Target: scaffold0670; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 5769 - 5701
Alignment:
| Q |
118 |
atgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatga |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |
|
|
| T |
5769 |
atgacaaaattatgagttagacataagtagacgaatatatggtgtaaattaatgaagagttgctaatga |
5701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University