View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6232_low_3 (Length: 416)

Name: NF6232_low_3
Description: NF6232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6232_low_3
NF6232_low_3
[»] chr5 (19 HSPs)
chr5 (11-401)||(8548205-8548595)
chr5 (129-333)||(8535225-8535425)
chr5 (237-369)||(8677633-8677765)
chr5 (222-333)||(9074902-9075010)
chr5 (237-369)||(8636695-8636827)
chr5 (237-369)||(8644040-8644172)
chr5 (128-317)||(1600478-1600666)
chr5 (241-333)||(8528778-8528870)
chr5 (277-358)||(8641242-8641323)
chr5 (266-332)||(2845207-2845273)
chr5 (266-332)||(2857028-2857094)
chr5 (246-332)||(9003307-9003393)
chr5 (266-332)||(2874638-2874704)
chr5 (87-169)||(9075030-9075112)
chr5 (45-197)||(8528602-8528754)
chr5 (264-332)||(2905127-2905195)
chr5 (48-91)||(8641062-8641105)
chr5 (45-90)||(1600667-1600712)
chr5 (56-108)||(8643888-8643940)
[»] chr6 (1 HSPs)
chr6 (145-329)||(16716086-16716267)
[»] scaffold0627 (1 HSPs)
scaffold0627 (237-333)||(4488-4584)
[»] chr1 (1 HSPs)
chr1 (240-369)||(5130637-5130766)
[»] chr4 (2 HSPs)
chr4 (241-333)||(9442939-9443031)
chr4 (64-197)||(9442782-9442915)
[»] chr7 (2 HSPs)
chr7 (143-333)||(48362031-48362223)
chr7 (266-369)||(35779694-35779797)


Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 8548595 - 8548205
Alignment:
Q  11 atcatcataaccttaagtgagaagatctgtacaaaacaacaagccttcctttatccaaatagaatgccaaaataggaagtttaaatataagcagtaacac 110  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548595 atcatcataaccttaagtgagaagatctgtacttaacaacaagccttcctttatccaaatagaatgccaaaataggaagtttaaatataagcagtaacac 8548496  T
Q  111 aaaaaattcacacatgaccctttgaatactcatcttatgattaaaattaattactatgatttttatgggagcatcaaccatcagattagattgcccaatc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548495 aaaaaattcacacatgaccctttgaatactcatcttatgattaaaattaattactatgatttttatgggagcatcaaccatcagattagattgcccaatc 8548396  T
Q  211 tgaaatattaaattagaagctacaatattcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagactt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548395 tgaaatattaaattagaagctacaatattcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagactt 8548296  T
Q  311 ggaatatatggaattacttcaaatgattctgaagaagagccatgaattcgaaaatctttaactccatatttatcggggttatagtaagtaa 401  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8548295 ggaatatgttgaattacttcaaatgattgtgaagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaa 8548205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 129 - 333
Target Start/End: Original strand, 8535225 - 8535425
Alignment:
Q  129 cctttgaatactcatcttatgattaaaattaattactatgatttt-tatgggagcatcaaccatcagattagattgcccaatctgaaatattaaat--ta 225  Q
    ||||||||||||| ||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||  |||||  |||   ||| || ||||  ||    
T  8535225 cctttgaatactcgtcttatgattaaaatcaattactatgactttgtaagggagcatcaaccatcagattcaattgca-aat---aaaaataaaatctta 8535320  T
Q  226 gaagctacaatattcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaatt 325  Q
    |||||||||   ||||||| |||||||||||||||| |||||||||||||| |||||||  |||||||||||||| |||||||||||||| | ||| |||    
T  8535321 gaagctaca---ttcttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaatgtgtgggatt 8535417  T
Q  326 acttcaaa 333  Q
    ||||||||    
T  8535418 acttcaaa 8535425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 237 - 369
Target Start/End: Original strand, 8677633 - 8677765
Alignment:
Q  237 attcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaaatga 336  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| || |||||||| |||||   |    
T  8677633 attcttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaacaaa 8677732  T
Q  337 ttctgaagaagagccatgaattcgaaaatcttt 369  Q
    ||| ||||||| ||| |||||||||||| ||||    
T  8677733 ttcggaagaagtgccgtgaattcgaaaaacttt 8677765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 9075010 - 9074902
Alignment:
Q  222 attagaagctacaatattcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatgg 321  Q
    |||||||||||||   ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |||    
T  9075010 attagaagctaca---ttcttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaatatgtgg 9074914  T
Q  322 aattacttcaaa 333  Q
     |||||||||||    
T  9074913 gattacttcaaa 9074902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 237 - 369
Target Start/End: Original strand, 8636695 - 8636827
Alignment:
Q  237 attcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaaatga 336  Q
    ||||| || |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||   |    
T  8636695 attctaaccttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaattatttcaacaaa 8636794  T
Q  337 ttctgaagaagagccatgaattcgaaaatcttt 369  Q
     || ||||||| ||| ||||||| |||| ||||    
T  8636795 ctcggaagaagtgccttgaattctaaaaacttt 8636827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 237 - 369
Target Start/End: Original strand, 8644040 - 8644172
Alignment:
Q  237 attcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaaatga 336  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||||  |||||||||||||||||||||||||||| || |||||||| |||||   |    
T  8644040 attcttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaacaaa 8644139  T
Q  337 ttctgaagaagagccatgaattcgaaaatcttt 369  Q
    ||| ||||||  ||| |||||||||||| ||||    
T  8644140 ttcggaagaaatgccgtgaattcgaaaaacttt 8644172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 128 - 317
Target Start/End: Complemental strand, 1600666 - 1600478
Alignment:
Q  128 ccctttgaatactcatcttatgattaaaattaattactatgatttttatgggagcatcaaccatcagattagattgc----ccaatctgaaatattaaat 223  Q
    ||||||||| |||  ||||||||||||||||||||||||||| || ||||||| |||| ||||||| || |||||      |||||   |||||  | ||    
T  1600666 ccctttgaaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcgaccatca-atcagattcaaacgccaataa-aaataaaatat 1600569  T
Q  224 tagaagctacaatattcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatat 317  Q
    | |||||||||   ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  1600568 ttgaagctaca---ttcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatat 1600478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 333
Target Start/End: Original strand, 8528778 - 8528870
Alignment:
Q  241 ttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaaa 333  Q
    |||| |||||||||||||||| |||||||||||| |||||||||  |||||||||||||| |||||||||||||| | ||| |||||||||||    
T  8528778 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaa 8528870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 8641242 - 8641323
Alignment:
Q  277 tcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaaatgattctgaagaagagccatgaatt 358  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||| |||  |||||||||    
T  8641242 tcctttcacgacatccttcaatgagattagacttggaatatgtggaattacttcaactctttctgaacaagtcccatgaatt 8641323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 2845273 - 2845207
Alignment:
Q  266 tcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaa 332  Q
    |||| |||||||||||||| |||||| |||||||| ||||||||||||||||||  |||||||||||    
T  2845273 tcaacattgtctcctttcacgacatcgttcaatgatattagacttggaatatattcaattacttcaa 2845207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 2857094 - 2857028
Alignment:
Q  266 tcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaa 332  Q
    |||| |||||||||||||| |||||| |||||||| ||||||||||||||||||  |||||||||||    
T  2857094 tcaacattgtctcctttcacgacatcgttcaatgatattagacttggaatatattcaattacttcaa 2857028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 332
Target Start/End: Original strand, 9003307 - 9003393
Alignment:
Q  246 ttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaa 332  Q
    |||||| || ||||| |||||||| ||||||||| || |   | |||||||||||||||||||||||||||| ||||||||||||||    
T  9003307 ttgagtagacattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcaa 9003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 2874704 - 2874638
Alignment:
Q  266 tcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaa 332  Q
    |||| |||||||||||||| |||||| |||||||| ||||||||| ||||||||  |||||||||||    
T  2874704 tcaacattgtctcctttcacgacatcgttcaatgatattagactttgaatatattcaattacttcaa 2874638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 9075112 - 9075030
Alignment:
Q  87 aagtttaaatataagcagtaacacaaaaaattcacacatgaccctttgaatactcatcttatgattaaaattaattactatga 169  Q
    ||||| |||||||||  |||||| || ||| |||| |  | ||||||||| ||||||||||||||||||||||||||||||||    
T  9075112 aagttaaaatataagtggtaacataagaaactcactcgagtccctttgaaaactcatcttatgattaaaattaattactatga 9075030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 8528602 - 8528754
Alignment:
Q  45 aacaacaagccttcctttatccaaatagaatgccaaaataggaagtttaaa-tataagcagtaacacaaaaaattcacacatgaccctttgaatactcat 143  Q
    ||||||| | |||| ||| ||||||| |||||  ||||||| ||||||||| ||||||  |||||| |  ||| | ||||| | ||||||||||||||      
T  8528602 aacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagt-gtaacataggaaacttacacaagtccctttgaatactcga 8528700  T
Q  144 cttatgattaaaattaattactatgatttttatgggagcatcaaccatcagatt 197  Q
    || ||||||| ||| ||||||||||| || || || ||||||||||||||||||    
T  8528701 ctcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt 8528754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 2905195 - 2905127
Alignment:
Q  264 cctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaa 332  Q
    |||||| ||||||||| |||| |||||| |||||||| |||||||||||||||| | |||| |||||||    
T  2905195 cctcaacattgtctccattcacgacatctttcaatgatattagacttggaatatgttgaataacttcaa 2905127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 8641062 - 8641105
Alignment:
Q  48 aacaagccttcctttatccaaatagaatgccaaaataggaagtt 91  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||    
T  8641062 aacaagtcttcctttatccaaatagaataccaaaacaggaagtt 8641105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 1600712 - 1600667
Alignment:
Q  45 aacaacaagccttcctttatccaaatagaatgccaaaataggaagt 90  Q
    ||||||||| |||||||| |||||| |||||| |||||||||||||    
T  1600712 aacaacaagtcttcctttctccaaacagaatggcaaaataggaagt 1600667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 8643888 - 8643940
Alignment:
Q  56 ttcctttatccaaatagaatgccaaaataggaagtttaaatataagcagtaac 108  Q
    ||||||| |||||||| ||||||||||||||||||| | || |||| ||||||    
T  8643888 ttcctttctccaaataaaatgccaaaataggaagttaacatgtaagtagtaac 8643940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 145 - 329
Target Start/End: Original strand, 16716086 - 16716267
Alignment:
Q  145 ttatgattaaaattaattactatgatttttatgggagcatcaaccatcagattagattgcccaatctgaaatattaaattagaagctacaatattcttac 244  Q
    |||| |||||||||||||||||||||||||||||||   |||||||||| |||  |||||| |||| |||| ||| | ||| ||  || |   |||||||    
T  16716086 ttataattaaaattaattactatgatttttatgggactgtcaaccatcaaattcaattgccaaatcagaaaaattgagttataaattaga---ttcttac 16716182  T
Q  245 tttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattactt 329  Q
     ||||||||||||||| |||||||||||| |||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  16716183 cttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactt 16716267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 4488 - 4584
Alignment:
Q  237 attcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaaa 333  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||    
T  4488 attcttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaaa 4584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 369
Target Start/End: Original strand, 5130637 - 5130766
Alignment:
Q  240 cttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaaatgattc 339  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||  | |||||| | ||| |||||||||| ||||| ||||||||||||||    ||     
T  5130637 cttaccttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatcttttt 5130736  T
Q  340 tgaagaagagccatgaattcgaaaatcttt 369  Q
    |||| |||  ||||||||||||||| ||||    
T  5130737 tgaacaagtcccatgaattcgaaaaacttt 5130766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 333
Target Start/End: Original strand, 9442939 - 9443031
Alignment:
Q  241 ttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaaa 333  Q
    |||| |||||||||||||||| |||||||||||| |||||||||  |||||||||||||| |||||||||||||| | | | |||||||||||    
T  9442939 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgttggattacttcaaa 9443031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 197
Target Start/End: Original strand, 9442782 - 9442915
Alignment:
Q  64 tccaaatagaatgccaaaataggaagtttaaa-tataagcagtaacacaaaaaattcacacatgaccctttgaatactcatcttatgattaaaattaatt 162  Q
    ||||||| ||||| |||||||| ||||||||| ||||||  |||||| |  ||| | ||||| | |||||||||||||||||| ||||||| ||| ||||    
T  9442782 tccaaatggaatggcaaaatagtaagtttaaaatataagt-gtaacataggaaacttacacaagtccctttgaatactcatctcatgattacaatcaatt 9442880  T
Q  163 actatgatttttatgggagcatcaaccatcagatt 197  Q
    ||||||| || ||  | ||||||||||||||||||    
T  9442881 actatgacttgtaaagaagcatcaaccatcagatt 9442915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 333
Target Start/End: Complemental strand, 48362223 - 48362031
Alignment:
Q  143 tcttatgattaaaattaattactatgatttttatgggagcatcaaccatcagattagattgcccaatctgaaatattaa--atta--gaagctacaatat 238  Q
    |||||||||||||||| |||||||||| || |||| || ||||||||||||||||  |||||| |||   ||| || ||  ||||  |||||||||   |    
T  48362223 tcttatgattaaaattgattactatgacttgtatgagaacatcaaccatcagattcaattgcc-aat---aaaaataaagtattatggaagctaca---t 48362131  T
Q  239 tcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatg-----agattagacttggaatatatggaattacttcaaa 333  Q
    |||||| ||||||||| ||||| |||||| ||||| |||||||||| ||||||||||||||     | |||||||||||||||| ||| |||||||||||    
T  48362130 tcttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaattaaattagacttggaatatgtgggattacttcaaa 48362031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 369
Target Start/End: Original strand, 35779694 - 35779797
Alignment:
Q  266 tcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatatggaattacttcaaatgattctgaagaagagccatgaattcgaaaat 365  Q
    ||||||||||||||||| |  |||||||||||||| |||||||||||||||| ||||||||||||||  |||| ||||  ||  ||| |||||||||||     
T  35779694 tcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaa 35779793  T
Q  366 cttt 369  Q
    ||||    
T  35779794 cttt 35779797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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