View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6232_low_5 (Length: 330)
Name: NF6232_low_5
Description: NF6232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6232_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 12077031 - 12076722
Alignment:
| Q |
9 |
acatcatcagtttatggattcagctgtcaattaaatgtat----taatctacctttatttgattataatagtttttgttagtnnnnnnnntataagaggg |
104 |
Q |
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| T |
12077031 |
acatcatcagtttatggattccgctgtcaattaaatgtatatattaatctacctttatttgattataatagtttttgttagtaaaaaaaaaataagaggg |
12076932 |
T |
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| Q |
105 |
aacaatttggaataggtttttctctcatgcaatgtcaagtatccaactttttgtttagattgttggctttatttaccgcttcaaagtgatataactaaat |
204 |
Q |
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| T |
12076931 |
aacaatttgtaataggtttttctctcatgcaatgtcaagtatccaactttttgtttagattgttggctttatttaccgcttcaaagtggtataactaaat |
12076832 |
T |
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| Q |
205 |
tcaattatgaaaaga--ctatgtcgttctaaagactaacaactgtaaaaaagaaacaaggaattagaagattgtgacattttcacacatgcttttggggg |
302 |
Q |
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| T |
12076831 |
tcaattatgaaaagactctatgtcgttctaaagactaaccactgtaaaagagaaacaaggaattagaagattgtgacattttcacacatgcttttggggg |
12076732 |
T |
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| Q |
303 |
atgtgattgt |
312 |
Q |
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| T |
12076731 |
atgcgattgt |
12076722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 12062182 - 12062049
Alignment:
| Q |
12 |
tcatcagtttatggattcagctgtcaattaaatgtattaatctacctttatttgattataatagtttttgt--tagtnnnnnnnntataagagggaacaa |
109 |
Q |
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| T |
12062182 |
tcatcggtttatggattccgctgtcaattaactgtattaatctacctttattttattataatagttattgttatagt-aaaagaatacaagagagaacga |
12062084 |
T |
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| Q |
110 |
tttggaataggtttttctctcatgcaatgtcaagt |
144 |
Q |
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| T |
12062083 |
tttggaatagattttgctctcatgcaatgtcaagt |
12062049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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