View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6233_high_1 (Length: 850)
Name: NF6233_high_1
Description: NF6233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6233_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 804; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 804; E-Value: 0
Query Start/End: Original strand, 12 - 835
Target Start/End: Original strand, 34729764 - 34730587
Alignment:
| Q |
12 |
atcatcagaaaacatagtgacagtaccttgtgtgttagcgttgtcttttgcaggcttcaagagaaaatcttttgcttgggggagcttgctgttctgcatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34729764 |
atcatcagaaaacatagtgacagtaccttgtgtgttagcgttgtcttttgcaggcttcaagagaaaatcttttgcttgggggagcttgctgttctgcatg |
34729863 |
T |
|
| Q |
112 |
ttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaagttagaagagag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34729864 |
ttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaagttataagagag |
34729963 |
T |
|
| Q |
212 |
cagtaaaatttgaatcattgagaaatgaatgacttgcaattaactacaacaaacctccaaaacaactaaaagtggatgttctttgatctatgtttcgact |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34729964 |
cagtaaaatttgaatcattgagaaatgaatgacttgcaattaactacaacaaacctacaaaacaactaaaagtggatgttctttgatctatgtttcgact |
34730063 |
T |
|
| Q |
312 |
aacagcaaaatttaaagttgttttattacaaaatcaggttttcaagaatggcatactcatacaaatctagttagtaaagacttcagcttaggcacgtcat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34730064 |
aacagcaaaatttaaagttgttttattacaaaatcaggttttaaagaatggcatactcatacaaatctagttagtaaagacttcagcttaggcacgtcat |
34730163 |
T |
|
| Q |
412 |
aatcacactcaattccgaacaatcatgatcattatttgtatcatatgccttaataaggggtacgctaccttaattatctgaagactcgggctcttaaatc |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34730164 |
aatcacactcaattccgaacaatcatgatcattatttgtatcatatgccttaataaggggtacgctaccttaattatctgaagactcaggctcttaaatc |
34730263 |
T |
|
| Q |
512 |
tgcctttaactatatcgagtccccatcccacaactctaatataggaataccctttctgacaataagtaattatcaagaataacatgaccgttactttgca |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34730264 |
tgcctttaactatatcgagtccccatcccacaactctaatataggaataccctttctgacaataagtaattatcaagaataacatgaccgttactttgca |
34730363 |
T |
|
| Q |
612 |
tggttattataaaattgttacagctagaactcttgaacacgcttaacttattcatgttacagaagattaagcctctttaccatcgaaacatatgacagtt |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34730364 |
tggttattataaaattgttacagctagaactcttgaacacgcttaacttattcatgttacagaagattaagcctctttaccatcgaaacgtatgacagtt |
34730463 |
T |
|
| Q |
712 |
aaaaatccaataagattcatgaaataaaagaaaaaatgagcagaacttataagagcttaaaaagataggaaattgtagcgaattaagaagttctgtcaca |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34730464 |
aaaaatccaataagattcatgaaataaaagaaaaaatgagcagaacttataagagcttaaaaagataggaaattgtagcgaattaagaagttctgtcaca |
34730563 |
T |
|
| Q |
812 |
taacatttaatgtccattgtaact |
835 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34730564 |
taacatttaatgtccattgtaact |
34730587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 34725707 - 34726104
Alignment:
| Q |
13 |
tcatcagaaaacatagtgacagtaccttgtgtgttagcgttgtcttttgcaggcttcaagagaaaatcttttgcttgggggagcttgctgttctgcatgt |
112 |
Q |
| |
|
|||| ||||| |||||||||||||| | |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34725707 |
tcatgagaaagcatagtgacagtacttggtgtgtcaatgttgtcttttgaaggcttcaagagaaaatcttttgcttgggggagcttgctgttgtgcatgt |
34725806 |
T |
|
| Q |
113 |
tttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaagttagaagagagc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| | | |
|
|
| T |
34725807 |
tttgccaggctaaatttgtagcagtcttggaattagtaaatggactcatctgttgcttcccatctgcagaaccaaaatatattagaagatagaagacaac |
34725906 |
T |
|
| Q |
213 |
agtaaaatttgaatcattgagaaatgaatgacttgcaattaactacaacaaacctccaaaacaactaaaagtggatgttctttgatctatgtttcgacta |
312 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| || |||||| ||| |||| ||||||||||||||| || |||| |||| ||||| |
|
|
| T |
34725907 |
agtaaaatttgaatcattgtgaaatgaatgacttgcaattaactataataaacctataaatcaaccaaaagtggatgttctctggtctaagttttgacta |
34726006 |
T |
|
| Q |
313 |
acagcaaaatttaaagttgttttattacaaaatcaggttttcaagaatggcatactcatacaaatctagttagtaaagacttcagcttaggcacgtcata |
412 |
Q |
| |
|
||||| ||||| ||||||| || |||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
34726007 |
acagc--aatttgaagttgtatttttactaaatcaggttttaacgaatggcgcactcatacaaatctagttagtaaagacttcggcttaggaacgtcata |
34726104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 101 - 455
Target Start/End: Original strand, 38610387 - 38610732
Alignment:
| Q |
101 |
tgttctgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaag |
200 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
38610387 |
tgttgtgcatgttttgccaggctaaatatgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaag |
38610486 |
T |
|
| Q |
201 |
ttagaagagagcagtaaaatttgaatcattgagaaatgaatgacttgcaattaactacaacaaacctccaaaacaactaaaagtggatgttctttgatct |
300 |
Q |
| |
|
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||||| || ||||||||| |||||||||| ||||||| ||| |
|
|
| T |
38610487 |
acagaagagaatagtaaaatttgcatcatcgcgaaatgaatgacttgcaattaactataa--------caaaacaaccaaaagtggatcttctttggtct |
38610578 |
T |
|
| Q |
301 |
atgtttcgactaacagcaaaatttaaagttgttttattacaaaatcaggttttcaagaatggcatactcatacaaatctagttagtaaagacttcagctt |
400 |
Q |
| |
|
| ||| |||||||| |||||| | ||||||| || |||| |||||||||||| ||| ||||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
38610579 |
aacttttgactaacaacaaaatgtcaagttgtatttttactaaatcaggttttaaag-atggcatactcgtaaaaatctagttagtaaagacttcggctt |
38610677 |
T |
|
| Q |
401 |
aggcacgtcataatcacactcaattccgaacaatcatgatcattatttgtatcat |
455 |
Q |
| |
|
||| || |||||||||||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
38610678 |
aggaacatcataatcacactcaagtccaaacaatcatgataattatttgtatcat |
38610732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 101 - 455
Target Start/End: Original strand, 38795172 - 38795517
Alignment:
| Q |
101 |
tgttctgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaag |
200 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
38795172 |
tgttgtgcatgttttgccaggctaaatatgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaag |
38795271 |
T |
|
| Q |
201 |
ttagaagagagcagtaaaatttgaatcattgagaaatgaatgacttgcaattaactacaacaaacctccaaaacaactaaaagtggatgttctttgatct |
300 |
Q |
| |
|
|||||||| ||||||||||| || || | ||||||||||||||||||||||||| || ||||||||| |||||||||| ||||||| ||| |
|
|
| T |
38795272 |
acagaagagaatagtaaaatttgcataatcgcgaaatgaatgacttgcaattaactataa--------caaaacaaccaaaagtggatcttctttggtct |
38795363 |
T |
|
| Q |
301 |
atgtttcgactaacagcaaaatttaaagttgttttattacaaaatcaggttttcaagaatggcatactcatacaaatctagttagtaaagacttcagctt |
400 |
Q |
| |
|
| ||| |||||||| |||||| | ||||||| || |||| |||||||||||| ||| ||||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
38795364 |
aacttttgactaacaacaaaatgtcaagttgtatttttactaaatcaggttttaaag-atggcatactcgtaaaaatctagttagtaaagacttcggctt |
38795462 |
T |
|
| Q |
401 |
aggcacgtcataatcacactcaattccgaacaatcatgatcattatttgtatcat |
455 |
Q |
| |
|
||| || |||||||||||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
38795463 |
aggaacatcataatcacactcaagtccaaacaatcatgataattatttgtatcat |
38795517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 589 - 835
Target Start/End: Original strand, 38795662 - 38795905
Alignment:
| Q |
589 |
aataacatgaccgttactttgcatggttattataaaattgttacagctagaactcttgaacacgcttaacttattcatgttacagaagattaagcctctt |
688 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38795662 |
aataacatgactattactttgcatggttcttatgaaattgtcacagctagaactcttgaacacgcttaacttattcatgttacagaagattaagcctctt |
38795761 |
T |
|
| Q |
689 |
taccatcgaaacatatgacagttaaaaatccaataagattcatgaaataaaagaaaaaatgagcagaacttataagagcttaaaaagataggaaattgta |
788 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||||| | |||||||||||| |||| |||||||||| || ||| | || |||||| ||||||||||| |
|
|
| T |
38795762 |
taccatcaaaacgtgtgacagttaaaaatccaataagttccatgaaataaaataaaagttgagcagaacatacaaggggttcaaaagacaggaaattgta |
38795861 |
T |
|
| Q |
789 |
gcgaattaagaagttctgtcacataacatttaatgtccattgtaact |
835 |
Q |
| |
|
|| | || |||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
38795862 |
gcaagtt---aagttctgccacatcacatttaatgttcattgtaact |
38795905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 602 - 790
Target Start/End: Original strand, 38610889 - 38611077
Alignment:
| Q |
602 |
ttactttgcatggttattataaaattgttacagctagaactcttgaacacgcttaacttattcatgttacagaagattaagcctctttaccatcgaaaca |
701 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
38610889 |
ttactttgcatggttattatgaaattgtctcagctagaactcttgaacatgcttaacttattcatgttatagaagattaagcctctttagcatcgaaacg |
38610988 |
T |
|
| Q |
702 |
tatgacagttaaaaatccaataagattcatgaaataaaagaaaaaatgagcagaacttataagagcttaaaaagataggaaattgtagc |
790 |
Q |
| |
|
| |||||||||||||||||||||||| ||||| || |||||||| |||||||||| || ||| | || |||||||||||||||||||| |
|
|
| T |
38610989 |
tgtgacagttaaaaatccaataagatccatgagatgaaagaaaagttgagcagaacatacaaggggttcaaaagataggaaattgtagc |
38611077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 51 - 313
Target Start/End: Original strand, 34720505 - 34720765
Alignment:
| Q |
51 |
gttgtcttttgcaggcttcaagagaaaatcttttgcttgggggagcttgctgttctgcatgttttgccaggctaaatttgtagcagtctttgaattagca |
150 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||| | |||||| || |||||| || ||||||||| ||||||||||| ||||||||||||||| ||| |
|
|
| T |
34720505 |
gttgacttttgcatacttcaagggaaaatcttttattcgggggaactcgctgttttgtatgttttgcaaggctaaatttatagcagtctttgaataggca |
34720604 |
T |
|
| Q |
151 |
aatggactcatctgttgctttccatctgcggaaccaaaatatattagaagttagaagagagcagtaaaatttgaatcattgagaaatgaatgacttgcaa |
250 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||| ||| ||||||||||| || ||||||| ||||||| || || |||| ||||||||||| ||| || |
|
|
| T |
34720605 |
aatggattcatctgttgcttcccatctgcagaactaaactatattagaagataagagagagcggtaaaatgtgcatgattgtgaaatgaatgatttgtaa |
34720704 |
T |
|
| Q |
251 |
ttaactacaacaaacctccaaaacaactaaaagtggatgttctttgatctatgtttcgactaa |
313 |
Q |
| |
|
|||||| || |||| | ||| ||||||||| ||| || |||||| | || |||| |||||| |
|
|
| T |
34720705 |
gtaactataataaacat--aaatcaactaaaattggctgctctttggtataagttttgactaa |
34720765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 678 - 825
Target Start/End: Original strand, 34726214 - 34726360
Alignment:
| Q |
678 |
ttaagcctctttaccatcgaaacatatgacagttaaaaatccaataagattcatgaaataaaagaaaaaatgagcagaacttataagagcttaaaaagat |
777 |
Q |
| |
|
|||||| ||||||||||| | | ||||||| || |||||||||| |||| ||||||||||| |||||| ||| ||||||||| ||||| |||||||||| |
|
|
| T |
34726214 |
ttaagcatctttaccatccagatgtatgacaattgaaaatccaatcagatccatgaaataaatgaaaaa-tgaacagaacttacaagaggttaaaaagat |
34726312 |
T |
|
| Q |
778 |
aggaaattgtagcgaattaagaagttctgtcacataacatttaatgtc |
825 |
Q |
| |
|
||| |||||||| ||||||||||||||| ||| ||||| |||||| |
|
|
| T |
34726313 |
aggcaattgtaggatattaagaagttctgttgcattacattcaatgtc |
34726360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 595 - 690
Target Start/End: Original strand, 34721014 - 34721110
Alignment:
| Q |
595 |
atgaccgttactttgcatggttattataaaattgttacagctagaactcttgaacacgc-ttaacttattcatgttacagaagattaagcctcttta |
690 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||| ||| ||||||||||||||||| || ||| ||||||| ||||||| | |||||||| |||||| |
|
|
| T |
34721014 |
atgaccattactctgcatggttattatgaaattgatactgctagaactcttgaacatgctttatcttattcttgttacaaaggattaagcatcttta |
34721110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University