View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6233_high_10 (Length: 255)

Name: NF6233_high_10
Description: NF6233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6233_high_10
NF6233_high_10
[»] chr7 (2 HSPs)
chr7 (6-255)||(36359949-36360198)
chr7 (6-250)||(36348697-36348934)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 36360198 - 36359949
Alignment:
Q  6 aaaccaatcagattctctggtccttgcaaatctaacatatcagttcaggtcagctacattatatattaagctagtgattaattaactaattagttcttcc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36360198 aaaccaatcagattctctggtccttgcaaatctaacatatcagttcaggttagctacattatatattaagctagtgattaattaactaattagttcttcc 36360099  T
Q  106 ttttttaagctccatatttttaagtaaattataatctcaaaaagtaacttttttcaaaaatttatttgtaagatatctggaagtcttgaagcatcagata 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36360098 ttttttaagctccatatttttaagtaaattataatctcaaaaagtaacttttttcaaaaatttatttgtaagatatctggaagtcttgaagcatcagata 36359999  T
Q  206 atccatcagattacagtgaagatcaaagacattggcttgtatttgtggaa 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36359998 atccatcagattacagtgaagatcaaagacattggcttgtatttgtggaa 36359949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 36348934 - 36348697
Alignment:
Q  6 aaaccaatcagattctctggtccttgcaaatctaacatatcagttcaggtcagctacattatatattaagctagtgattaattaactaattagttcttcc 105  Q
    ||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||||||                 || ||||| ||||||||||     
T  36348934 aaaccaatcagattctctggtccttgcaaatctaagatatcattccaggtcagttacattata-----------------atgaactatttagttcttca 36348852  T
Q  106 ttttttaagctccatatttttaagtaaattataat----------ctcaaaaagtaacttttttcaaaaatttatttgtaagatatctggaagtcttgaa 195  Q
    | ||||||||| ||  |||||||||||||||||||          |||||||||||| ||||||| |||||||| |||| |||||||||||  |||   |    
T  36348851 tattttaagcttcacctttttaagtaaattataattaattataatctcaaaaagtaatttttttcgaaaatttaattgtcagatatctggagttctcata 36348752  T
Q  196 gcatcagataatccatcagattacagtgaagatcaaagacattggcttgtatttg 250  Q
    |||||| |||||||||||||||| ||| |||||| | ||||||||||||||||||    
T  36348751 gcatcaaataatccatcagattatagtaaagatccaggacattggcttgtatttg 36348697  T

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