View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6233_high_11 (Length: 249)
Name: NF6233_high_11
Description: NF6233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6233_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 31609307 - 31609543
Alignment:
| Q |
1 |
ctctcaaagagtcatagcttgtgtgtctcatcagcatggagaaactatcaaaaatgaaaaacaagtttttcaagtttctaccaaaacgacctgtagcttc |
100 |
Q |
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| T |
31609307 |
ctctcaaagagtcatagcttgtgtgtctcatcaacatggagaaactatcaaaaatgaaaaacaagtttttcaagtttctaccaaaacgacctgtagcttc |
31609406 |
T |
|
| Q |
101 |
ggtttctagttatcaaaacccaacattgagtcctaacgcaagtgttacaactgcaagaaaggtttcaataattccaaaagaagcgcgaagaaagcatgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31609407 |
ggtttctagttatcaaaacccaacattgagtcctaacgcaagtgttacaactgcaagaaaggtttcaataattccaaaagaagcgcgaagaaagcataga |
31609506 |
T |
|
| Q |
201 |
agtataagctttagcgcgcgagaactatcctctccta |
237 |
Q |
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||||||||||||||||||||||||| ||||||||||| |
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| T |
31609507 |
agtataagctttagcgcgcgagaaccatcctctccta |
31609543 |
T |
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