View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6233_high_3 (Length: 418)
Name: NF6233_high_3
Description: NF6233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6233_high_3 |
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| [»] scaffold0372 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 3294 - 2880
Alignment:
| Q |
13 |
aatatctagaaatgtttctctccgaacaaatactgaagtgcgccttttgtacaactcgaatggtatgctcttaattttactatccttgctcaaaagtgat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3294 |
aatatctagaaatgtttctctccgaacaaatactgaagtgcgccttttgtacaactcgaatggtatgctcttaattttactatccttgctcaaaagtgat |
3195 |
T |
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| Q |
113 |
tggtttcctaagtcttctagagaaatagctgcatcaggctgcaaaagatcagtagtactcttgctcttggtgcattcaaaaactcttttgcaaatctgat |
212 |
Q |
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| T |
3194 |
tggtttcctaagtcttctagagaaattgctgcatcaggctgcaaaagatcagtagtactcttgctcttggtgcattcaaaaactcttttgcaaatctgat |
3095 |
T |
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| Q |
213 |
aagaagaaaatggaaaacatattcagaatagttttctacaaaatctccaaaattgtgcttacagtgaggttttaactctcagtgtaagggtgacctattc |
312 |
Q |
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| T |
3094 |
aagaagaaaatggaaaacatattcagaatagttttctacaaaatctccaaaattgtgcttacaatgaggtattaactctcagtgtaagggtgacctatca |
2995 |
T |
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| Q |
313 |
tgaactacgatc---------gagacattactcattaatacaagacaaccaaataacccatcacttcaaattagtctatcatgaatccaataaaatgcca |
403 |
Q |
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| T |
2994 |
tgaactacgatcaagacaggagagacattactcagtaatacaagacaaccaaataacccatcacttcaaattagtctatcatgaatccaataaaatgcca |
2895 |
T |
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| Q |
404 |
taagttaattaccaa |
418 |
Q |
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| T |
2894 |
taagttaattaccaa |
2880 |
T |
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Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Original strand, 21448242 - 21448656
Alignment:
| Q |
13 |
aatatctagaaatgtttctctccgaacaaatactgaagtgcgccttttgtacaactcgaatggtatgctcttaattttactatccttgctcaaaagtgat |
112 |
Q |
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| T |
21448242 |
aatatctagaaatgtttctctccgaacaaatactgaagtgcgccttttgtacaactcgaatggtatgctcttaattttactatccttgctcaaaagtgat |
21448341 |
T |
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| Q |
113 |
tggtttcctaagtcttctagagaaatagctgcatcaggctgcaaaagatcagtagtactcttgctcttggtgcattcaaaaactcttttgcaaatctgat |
212 |
Q |
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| T |
21448342 |
tggtttcctaagtcttctagagaaattgctgcatcaggctgcaaaagatcagtagtactcttgctcttggtgcattcaaaaactcttttgcaaatctgat |
21448441 |
T |
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| Q |
213 |
aagaagaaaatggaaaacatattcagaatagttttctacaaaatctccaaaattgtgcttacagtgaggttttaactctcagtgtaagggtgacctattc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
21448442 |
aagaagaaaatggaaaacatattcagaatagttttctacaaaatctccaaaattgtgcttacaatgaggtattaactctcagtgtaagggtgacctatca |
21448541 |
T |
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| Q |
313 |
tgaactacgatc---------gagacattactcattaatacaagacaaccaaataacccatcacttcaaattagtctatcatgaatccaataaaatgcca |
403 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21448542 |
tgaactacgatcaagacaggagagacattactcagtaatacaagacaaccaaataacccatcacttcaaattagtctatcatgaatccaataaaatgcca |
21448641 |
T |
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| Q |
404 |
taagttaattaccaa |
418 |
Q |
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| T |
21448642 |
taagttaattaccaa |
21448656 |
T |
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