View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6233_high_4 (Length: 414)

Name: NF6233_high_4
Description: NF6233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6233_high_4
NF6233_high_4
[»] chr3 (1 HSPs)
chr3 (1-399)||(1153629-1154026)
[»] chr5 (11 HSPs)
chr5 (1-247)||(35410707-35410953)
chr5 (1-237)||(35386056-35386292)
chr5 (1-240)||(35754855-35755094)
chr5 (2-246)||(35366895-35367139)
chr5 (1-247)||(35376440-35376692)
chr5 (1-247)||(35423699-35423951)
chr5 (147-247)||(35370280-35370381)
chr5 (160-234)||(35437060-35437134)
chr5 (307-375)||(35753766-35753834)
chr5 (307-375)||(35422617-35422685)
chr5 (2-37)||(35437257-35437292)
[»] chr7 (1 HSPs)
chr7 (1-246)||(29623038-29623283)
[»] chr1 (3 HSPs)
chr1 (1-247)||(10415597-10415843)
chr1 (2-246)||(10420485-10420729)
chr1 (166-246)||(10410071-10410151)
[»] chr2 (3 HSPs)
chr2 (1-237)||(30626115-30626351)
chr2 (1-237)||(30663066-30663302)
chr2 (1-237)||(30671746-30671982)
[»] chr8 (2 HSPs)
chr8 (149-234)||(13564677-13564762)
chr8 (264-384)||(13564304-13564424)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 1154026 - 1153629
Alignment:
Q  1 aagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1154026 aagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagcaaaatct 1153927  T
Q  101 accctttgtgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagcct 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1153926 accctttttgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaatagcct 1153827  T
Q  201 tgaaatcttcacctttgtaatcaatacttgaacaacaagtcaggattcttccaagatttgtttgatttccaatactattaggaatgaaaccatataattt 300  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1153826 tgaaatcttcacctttgcaatcaatacttgagcaacaagtcgggattcttccaagatttgtttgatttccaatactattaggaatgaaaccatataattt 1153727  T
Q  301 gtttgattgcaagaccaatcgtactagattctgaagctttccgattgaatttggaatcgttccctcgaggaaattatttccaatatatttaagtaagtt 399  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1153726 gtttgactgcaagaacaatcgtactagattctgaag-tttccgattgaatttggaatcgttccctcgaggaaattatttccaatatatttaagtaagtt 1153629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 35410953 - 35410707
Alignment:
Q  1 aagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatct 100  Q
    ||||||||| ||||| ||||||| |||||||||||||  | |||||| ||| |||||||||||| |||||||||||||||||| |||||||| ||  |||    
T  35410953 aagaagaacgttgctcggcttaagatcacagtgaactacagcttgctctgtctcattgtgaagataatcaagtgcatgagctacatcaagagcaatgtct 35410854  T
Q  101 accctttgtgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagcct 200  Q
    | |||||||||||| |||||||| |||||||||||||||||  |||||||||| | |||||||||| |||| |||||||| ||||||||||||| |||||    
T  35410853 aacctttgtgtgaggttgagattatgattttcagacccttcgttatcatgcaaaaacttttctagattcccattaggcattaactcaaaaacaatagcct 35410754  T
Q  201 tgaaatcttcacctttgtaatcaatacttgaacaacaagtcaggatt 247  Q
    |||| |||||||| || ||||||| |||||||||||| || ||||||    
T  35410753 tgaactcttcaccattataatcaacacttgaacaacacgttaggatt 35410707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 35386292 - 35386056
Alignment:
Q  1 aagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatct 100  Q
    ||||||||| ||||||||||||| |||||||||||||    |||||| |||||||||||||||| |||||||||||||||||| |||||||| ||  |||    
T  35386292 aagaagaacgttgcttggcttaagatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcaatgtct 35386193  T
Q  101 accctttgtgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagcct 200  Q
    | ||||| |||||| |||||||| |||||||||||||||||| |||  ||||| | |||||| |||||| | || | ||||||||||||||||| |||||    
T  35386192 aacctttatgtgaggttgagattatgattttcagacccttcattattgtgcaaaaacttttcaagactctcatttgacatgaactcaaaaacaatagcct 35386093  T
Q  201 tgaaatcttcacctttgtaatcaatacttgaacaaca 237  Q
    ||||||||||||| || ||||||| ||||||||||||    
T  35386092 tgaaatcttcacccttataatcaacacttgaacaaca 35386056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 35755094 - 35754855
Alignment:
Q  1 aagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatct 100  Q
    |||||||||||||||||||||||||||||||||||||   ||||| | |||||||||||||||| |||| | ||||||||||| |||||||| ||  |||    
T  35755094 aagaagaacattgcttggcttaatatcacagtgaactacgacttgttctgtatcattgtgaagataatccaatgcatgagctacatcaagagcaatgtct 35754995  T
Q  101 accctttgtgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagcct 200  Q
    | |||||||||||| ||||||||   |||| | ||||||||| |||| ||||||| |||||| |||||||| || | ||||||||||||||||| ||| |    
T  35754994 aacctttgtgtgaggttgagattaaaatttcctgacccttcattatcgtgcaacaacttttcaagactcccatttgacatgaactcaaaaacaatagctt 35754895  T
Q  201 tgaaatcttcacctttgtaatcaatacttgaacaacaagt 240  Q
    ||||||||||||| || ||||||| |||||||||||||||    
T  35754894 tgaaatcttcaccattataatcaacacttgaacaacaagt 35754855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 35367139 - 35366895
Alignment:
Q  2 agaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatcta 101  Q
    |||||||| ||||| ||||||||||||||||||||| |   || || |||| ||||||||||| |||| ||||||||||||| |||||||| ||  || |    
T  35367139 agaagaacgttgctcggcttaatatcacagtgaactatggatttctctgtaccattgtgaagataatcgagtgcatgagctacatcaagagcaatgtcaa 35367040  T
Q  102 ccctttgtgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagcctt 201  Q
    | || ||| ||||  ||||||| |||||| ||||||||||  |||||||||  | |||||||||||| || |||||||||||||||||||||| ||||||    
T  35367039 ctctgtgtctgaggctgagattatgatttccagacccttcgttatcatgcagaagcttttctagacttcccttaggcatgaactcaaaaacaatagcctt 35366940  T
Q  202 gaaatcttcacctttgtaatcaatacttgaacaacaagtcaggat 246  Q
    ||| |||||||| || |||||||| |||||||||||||| |||||    
T  35366939 gaactcttcacccttataatcaatgcttgaacaacaagttaggat 35366895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 35376692 - 35376440
Alignment:
Q  1 aagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatct 100  Q
    ||||||||||||||||||||||| |||||| ||||||  |||||||| |||||||||||||||| |||| | |||||||||||  || |||| ||  |||    
T  35376692 aagaagaacattgcttggcttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtct 35376593  T
Q  101 accctttgtgtgagcttgagattgtgattttcagac------ccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaa 194  Q
    | |||||||||||  ||||||||  |||||  ||||       ||||  || |||||||||  ||||| ||| ||||  |||||||||||||||||||||    
T  35376592 aacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggttttccagattcccactaggcatgaactcaaaaacaa 35376493  T
Q  195 cagccttgaaatcttcacctttgtaatcaatacttgaacaacaagtcaggatt 247  Q
      ||||| ||||||||||| || ||||||| ||||||||||||||| ||||||    
T  35376492 tggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggatt 35376440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 35423951 - 35423699
Alignment:
Q  1 aagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatct 100  Q
    |||||||||||||||||| |||| |||||| ||||||  |||||||| |||||||||||||||| |||| | |||||||||||  || |||| ||  |||    
T  35423951 aagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtct 35423852  T
Q  101 accctttgtgtgagcttgagattgtgattttcagac------ccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaa 194  Q
    | |||||||||||  ||||||||  |||||  ||||       ||||  || |||||||||  ||||||||| ||||  |||||||||||||||||||||    
T  35423851 aacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggttttctagattcccactaggcatgaactcaaaaacaa 35423752  T
Q  195 cagccttgaaatcttcacctttgtaatcaatacttgaacaacaagtcaggatt 247  Q
      ||||| ||||||||||| || ||||||| ||||||||| ||||| ||||||    
T  35423751 tggccttaaaatcttcaccattataatcaacacttgaacagcaagttaggatt 35423699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 35370381 - 35370280
Alignment:
Q  147 catgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagcctt-gaaatcttcacctttgtaatcaatacttgaacaacaagtcagga 245  Q
    |||||||||| ||||||| |||||| || ||||||||||||||||||| |||||| ||| |||||||| || ||||||| |||||| ||||| || ||||    
T  35370381 catgcaacatgttttctaaactcccattgggcatgaactcaaaaacaatagccttggaactcttcaccattataatcaacacttgagcaacacgttagga 35370282  T
Q  246 tt 247  Q
    ||    
T  35370281 tt 35370280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 35437134 - 35437060
Alignment:
Q  160 ttctagactcccgttaggcatgaactcaaaaacaacagccttgaaatcttcacctttgtaatcaatacttgaaca 234  Q
    ||||||||||||  |||||||||| |||||||| | |||||||||| ||||||| || |||||||||||||||||    
T  35437134 ttctagactccccataggcatgaattcaaaaactatagccttgaaaacttcaccattataatcaatacttgaaca 35437060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 35753834 - 35753766
Alignment:
Q  307 ttgcaagaccaatcgtactagattctgaagctttccgattgaatttggaatcgttccctcgaggaaatt 375  Q
    |||||| ||||||| ||||||||| | ||||||||| |||||||||||||| | |||||| ||||||||    
T  35753834 ttgcaataccaatcttactagatttttaagctttccaattgaatttggaattggtccctcaaggaaatt 35753766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 35422685 - 35422617
Alignment:
Q  307 ttgcaagaccaatcgtactagattctgaagctttccgattgaatttggaatcgttccctcgaggaaatt 375  Q
    ||||||||||| || | |||||||||  || ||||| ||||||||||||||| ||||||| ||||||||    
T  35422685 ttgcaagaccagtcttcctagattcttcagttttccaattgaatttggaatctttccctcaaggaaatt 35422617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 35437292 - 35437257
Alignment:
Q  2 agaagaacattgcttggcttaatatcacagtgaact 37  Q
    ||||||||||| ||||||||||||||||||||||||    
T  35437292 agaagaacattacttggcttaatatcacagtgaact 35437257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 29623038 - 29623283
Alignment:
Q  1 aagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatct 100  Q
    ||||||||||||||||||||||| |||||||||||||  | |||| | | |||||||||||||| |||| | ||||||||||| |||||||| ||  |||    
T  29623038 aagaagaacattgcttggcttaacatcacagtgaactacagcttgttctatatcattgtgaagataatccaatgcatgagctacatcaagagcaatgtct 29623137  T
Q  101 accctttgtgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagcct 200  Q
    | |||||||||||| |||||||| ||  || |||| |||||| |||| |||||||||||||||||||||   |||||||||||||||||||||| |||||    
T  29623138 atcctttgtgtgaggttgagattatggcttccagatccttcattatcgtgcaacatcttttctagactcatattaggcatgaactcaaaaacaatagcct 29623237  T
Q  201 tgaaatcttcacctttgtaatcaatacttgaacaacaagtcaggat 246  Q
    |||||||||||||||| ||||||| ||||||||||||||| |||||    
T  29623238 tgaaatcttcacctttataatcaacacttgaacaacaagttaggat 29623283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 10415597 - 10415843
Alignment:
Q  1 aagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatct 100  Q
    ||||||||| ||||||| ||||| |||||||||||||    |||||| |||||||||||||||| |||||||||||||||||| ||||||||  |  |||    
T  10415597 aagaagaacgttgcttgacttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctagatcaagagcgatgtct 10415696  T
Q  101 accctttgtgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagcct 200  Q
    | ||||||||  ||  ||||||| ||| || ||||||||||  |||| ||||  |||||||| |||||||| |||||||||||||||||||||| |||||    
T  10415697 aacctttgtgccaggctgagattatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagcct 10415796  T
Q  201 tgaaatcttcacctttgtaatcaatacttgaacaacaagtcaggatt 247  Q
    ||||||||||||| || ||||||| ||||||||||||||| ||||||    
T  10415797 tgaaatcttcaccattataatcaacacttgaacaacaagttaggatt 10415843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 10420485 - 10420729
Alignment:
Q  2 agaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatcta 101  Q
    |||||||| ||||| ||||||||||||||||||||| |  |||||| |||| ||||||||||| ||| |||||||||||||| |||||||| ||  || |    
T  10420485 agaagaacgttgctcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaagataattaagtgcatgagctacatcaagagcaatgtcaa 10420584  T
Q  102 ccctttgtgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagcctt 201  Q
    |||||||| ||||  ||||||| ||| || ||||||||||  |||| ||||  | ||||||||||||||| |||||||||||||||||||||| ||||||    
T  10420585 ccctttgtctgaggctgagattatgaattccagacccttctttatcgtgcagaagcttttctagactccccttaggcatgaactcaaaaacaatagcctt 10420684  T
Q  202 gaaatcttcacctttgtaatcaatacttgaacaacaagtcaggat 246  Q
    ||| |||||||| || |||||||  |||||||||||||| |||||    
T  10420685 gaactcttcacccttataatcaacgcttgaacaacaagttaggat 10420729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 10410071 - 10410151
Alignment:
Q  166 actcccgttaggcatgaactcaaaaacaacagccttgaaatcttcacctttgtaatcaatacttgaacaacaagtcaggat 246  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  10410071 actcccattaggcatgaactcaaaaacaatagccttgaaatcttcacctttataatcaacacttgaacaacaagttaggat 10410151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 30626351 - 30626115
Alignment:
Q  1 aagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatct 100  Q
    ||||||||||||| |||| || | |||||| ||||||  ||| | ||  ||| ||||||||||| |||| | ||||||||||| |||||||| ||  ||     
T  30626351 aagaagaacattgtttggtttcacatcacattgaactacaacattctcagtaccattgtgaagataatccaatgcatgagctacatcaagagcaatgtca 30626252  T
Q  101 accctttgtgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagcct 200  Q
    ||||||||||||||  ||||||| ||| || ||||| ||||  |||| ||||  | ||||||||||||||| |||||||||||||||||||||| |||||    
T  30626251 accctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttttctagactccccttaggcatgaactcaaaaacaatagcct 30626152  T
Q  201 tgaaatcttcacctttgtaatcaatacttgaacaaca 237  Q
    |||| || ||||| || ||||| || |||||||||||    
T  30626151 tgaactcgtcacccttataatctattcttgaacaaca 30626115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 30663302 - 30663066
Alignment:
Q  1 aagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatct 100  Q
    ||||||||||||| |||| || | |||||||||||||  ||| | ||  ||| ||||||||||| |||| | ||||||||||| |||||||| ||  ||     
T  30663302 aagaagaacattgtttggtttcacatcacagtgaactacaacattctcagtaccattgtgaagataatccaatgcatgagctacatcaagagcaatgtca 30663203  T
Q  101 accctttgtgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagcct 200  Q
    ||||||||||||||  ||||||| ||| || ||||| ||||  |||| ||||  | ||||||||||||||| |||||||||||||||||||||| |||||    
T  30663202 accctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttttctagactccccttaggcatgaactcaaaaacaatagcct 30663103  T
Q  201 tgaaatcttcacctttgtaatcaatacttgaacaaca 237  Q
    |||| || ||||| || ||||| |  |||||||||||    
T  30663102 tgaactcgtcacccttataatctacgcttgaacaaca 30663066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 30671982 - 30671746
Alignment:
Q  1 aagaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagaaaaatct 100  Q
    ||||||||||||| |||| || | |||||||||||||  ||| | ||  ||| ||||||||||| |||| | ||||||||||| |||||||| ||  ||     
T  30671982 aagaagaacattgtttggtttcacatcacagtgaactacaacattctcagtaccattgtgaagataatccaatgcatgagctacatcaagagcaatgtca 30671883  T
Q  101 accctttgtgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagcct 200  Q
    ||||||||||||||  ||||||| ||| || ||||| ||||  |||| ||||  | ||||||||||||||| |||||||||||||||||||||| |||||    
T  30671882 accctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttttctagactccccttaggcatgaactcaaaaacaatagcct 30671783  T
Q  201 tgaaatcttcacctttgtaatcaatacttgaacaaca 237  Q
    |||| || ||||| || ||||| |  |||||||||||    
T  30671782 tgaactcgtcacccttataatctacgcttgaacaaca 30671746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 13564762 - 13564677
Alignment:
Q  149 tgcaacatcttttctagactcccgttaggcatgaactcaaaaacaacagccttgaaatcttcacctttgtaatcaatacttgaaca 234  Q
    |||||||||||||||||||| || |||| ||||||||||||||||| |||||||||||| ||||| || | |||||||||||||||    
T  13564762 tgcaacatcttttctagactaccattagacatgaactcaaaaacaatagccttgaaatcgtcacccttattatcaatacttgaaca 13564677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 384
Target Start/End: Complemental strand, 13564424 - 13564304
Alignment:
Q  264 gatttccaatactattaggaatgaaaccatataatttgtttgattgcaagaccaatcgtactagattctgaagctttccgattgaatttggaatcgttcc 363  Q
    |||| |||||| || ||||||||  |||| |||||||||||  |||||||||||||  ||||||||||| |||| |||| ||||||| |||||| |||||    
T  13564424 gattgccaataatagtaggaatgttaccagataatttgttttcttgcaagaccaattttactagattcttaagcattccaattgaatctggaattgttcc 13564325  T
Q  364 ctcgaggaaattatttccaat 384  Q
    ||| |||||||| ||||||||    
T  13564324 ctcaaggaaattgtttccaat 13564304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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