View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6233_high_6 (Length: 388)
Name: NF6233_high_6
Description: NF6233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6233_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 51 - 378
Target Start/End: Complemental strand, 10689555 - 10689228
Alignment:
| Q |
51 |
ccggagacagcgatattctgatgttgataatagtccagaatctttactcgtttttagtggaaacaacaatgtgcatagtttatacgacctattactgaat |
150 |
Q |
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| T |
10689555 |
ccggagacagcgatcttatgatgttgataatagtccagaatctttgctcgtttttagtggaaacaacaatgtgcatggtttatacgacctattactaaat |
10689456 |
T |
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| Q |
151 |
tacaaaactctattaacctcgctatccggtgtggaagatgtacctgtcttgtgttctcctgttccattccaaaattctgctatgacttctcctgatatta |
250 |
Q |
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| T |
10689455 |
tacaaaactctattggcctcgctgtccggtgtggaagatgtacctgtcttgtgttctcctgttccattccaaaattctgctatgacttctcctgatatta |
10689356 |
T |
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| Q |
251 |
aatgcatggaaacgacaagagctgaaaacattgcacaaggatcatcaaatggtcttttttatagcattgaagttaaggatgcaattattccaccatggat |
350 |
Q |
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| T |
10689355 |
aatgcatggagatgacaagagctgaagatattgcacaaggatcatcaaatgaccttttttatagcattgaagttaaggatgcaattattccaccgtggat |
10689256 |
T |
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| Q |
351 |
tatctgcaatatatgtgcattgatgatg |
378 |
Q |
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| T |
10689255 |
tatctgcaatatatgtgcattgatgatg |
10689228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 375
Target Start/End: Original strand, 43559255 - 43559349
Alignment:
| Q |
281 |
ttgcacaaggatcatcaaatggtcttttttatagcattgaagttaaggatgcaattattccaccatggattatctgcaatatatgtgcattgatg |
375 |
Q |
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| T |
43559255 |
ttgcacaaggatcatcagatggtcttttatgtagcattgaaattaaggatacatttattccaccttggattatcagccgtatatgtgcattgatg |
43559349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 43558882 - 43558935
Alignment:
| Q |
193 |
cctgtcttgtgttctcctgttccattccaaaattctgctatgacttctcctgat |
246 |
Q |
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| T |
43558882 |
cctgtcttgtgttctcctgttccgttccaaagttctgctttgacttctcctgat |
43558935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 43558645 - 43558732
Alignment:
| Q |
67 |
tctgatgttgataatagtccagaatctttactcgtttttagtggaaacaacaatgtgcatagtttatacgacctattactgaattaca |
154 |
Q |
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| T |
43558645 |
tctgacgttgataatagcccagaatcattgctggttttcagtggcagcaacaatgtgcatggcttatttgacctattactgaattaca |
43558732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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