View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6233_low_12 (Length: 307)
Name: NF6233_low_12
Description: NF6233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6233_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 11159250 - 11159545
Alignment:
| Q |
1 |
aaaaacaagttggcccaaaaacgttttttagctgcccataaccttttnnnnnnnctaaatagacatcttaaaataaacttgactttatttgttttaaaaa |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11159250 |
aaaatcaagttggcccaaaaacgttttttagctgcccataaccttttaaaaaaactaaatagacatcttaaaataaacttgactttatttgttttaaaaa |
11159349 |
T |
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| Q |
101 |
tagtctgacctaacatgaatatgatttatgttgggtcacatatactcgtatcttgtagcctcttttatttaatccttacgatatgtgtcatccccattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11159350 |
tagtctgacctaacatgaatatgatttatgttgggtttcatatactcgtatcttgtagcctcttttatttaatccttacgatatgtgtcatccccattga |
11159449 |
T |
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| Q |
201 |
gttacacctaagagcacacgttggagagtcgtggcaa--------tgtgcatggctgcaatt-taacctgaacatatatcttcacagccatccacc |
287 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
11159450 |
gttacacctaagagcacacgttggagagtcgtggcaatgtgcaattgtgcatggctgcaattgtaacctgaaaatatatcttcacagccatccacc |
11159545 |
T |
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