View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6233_low_16 (Length: 255)
Name: NF6233_low_16
Description: NF6233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6233_low_16 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 36360198 - 36359949
Alignment:
| Q |
6 |
aaaccaatcagattctctggtccttgcaaatctaacatatcagttcaggtcagctacattatatattaagctagtgattaattaactaattagttcttcc |
105 |
Q |
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| T |
36360198 |
aaaccaatcagattctctggtccttgcaaatctaacatatcagttcaggttagctacattatatattaagctagtgattaattaactaattagttcttcc |
36360099 |
T |
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| Q |
106 |
ttttttaagctccatatttttaagtaaattataatctcaaaaagtaacttttttcaaaaatttatttgtaagatatctggaagtcttgaagcatcagata |
205 |
Q |
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| T |
36360098 |
ttttttaagctccatatttttaagtaaattataatctcaaaaagtaacttttttcaaaaatttatttgtaagatatctggaagtcttgaagcatcagata |
36359999 |
T |
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| Q |
206 |
atccatcagattacagtgaagatcaaagacattggcttgtatttgtggaa |
255 |
Q |
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| T |
36359998 |
atccatcagattacagtgaagatcaaagacattggcttgtatttgtggaa |
36359949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 36348934 - 36348697
Alignment:
| Q |
6 |
aaaccaatcagattctctggtccttgcaaatctaacatatcagttcaggtcagctacattatatattaagctagtgattaattaactaattagttcttcc |
105 |
Q |
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| T |
36348934 |
aaaccaatcagattctctggtccttgcaaatctaagatatcattccaggtcagttacattata-----------------atgaactatttagttcttca |
36348852 |
T |
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| Q |
106 |
ttttttaagctccatatttttaagtaaattataat----------ctcaaaaagtaacttttttcaaaaatttatttgtaagatatctggaagtcttgaa |
195 |
Q |
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| T |
36348851 |
tattttaagcttcacctttttaagtaaattataattaattataatctcaaaaagtaatttttttcgaaaatttaattgtcagatatctggagttctcata |
36348752 |
T |
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| Q |
196 |
gcatcagataatccatcagattacagtgaagatcaaagacattggcttgtatttg |
250 |
Q |
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| T |
36348751 |
gcatcaaataatccatcagattatagtaaagatccaggacattggcttgtatttg |
36348697 |
T |
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