View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6233_low_19 (Length: 238)
Name: NF6233_low_19
Description: NF6233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6233_low_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 25582115 - 25581888
Alignment:
| Q |
11 |
tcatcaccagaaaactctatggtcgccacatcctctttggcctcgccgaaatcttcaacagagtattcaaaatcaccaacctccatttcatcattatcag |
110 |
Q |
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| T |
25582115 |
tcatcaccagaaaactctatggtcgccacatcctctttggcctcgccgaaatcttcaacagagtattcaaaatcaccaacctccatttcatcattatcag |
25582016 |
T |
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| Q |
111 |
ttatccttaagaaaatgatcctctcacggatgtagtagaattctactcaatctgatccacacccaacacctctttgccaccatgtggggtgaacatacct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25582015 |
ttatccttaagaaaatgatcctctcacggatgtagtagaattctactcaatctgatccacacccaacacctctttgccaccatgtggggtgaacatacct |
25581916 |
T |
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| Q |
211 |
tcacctcctaagaggtttttctcccgcc |
238 |
Q |
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||||||||||| |||||||||||||||| |
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| T |
25581915 |
tcacctcctaaaaggtttttctcccgcc |
25581888 |
T |
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