View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6233_low_2 (Length: 429)
Name: NF6233_low_2
Description: NF6233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6233_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Original strand, 9384827 - 9385223
Alignment:
| Q |
20 |
accttcactattagaatgatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacatcatttttgttcttcccttctttc |
119 |
Q |
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| T |
9384827 |
accttcactattagaatgatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacctcatttttgttcttcccttctttc |
9384926 |
T |
|
| Q |
120 |
tcataagagaaaaacaccataggcttcaacttcgaaatcaaagatgacccttttgttccaagtgctggcatagnnnnnnnnngtagtacagaacttaata |
219 |
Q |
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| T |
9384927 |
tcataagagaaaaacaccataggcttcaacttcgaaatcaaagatgacccttttgttccaagtgctggcatagaaaaaaaaagtagtacagaacttaata |
9385026 |
T |
|
| Q |
220 |
tagatatagtgattgtgttcacttctcttaaaactctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatgagttaactttgttctgcat |
319 |
Q |
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| T |
9385027 |
tagatatagtgattgtgttcacttctcttaaaactctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatgagttaactttgttctgcat |
9385126 |
T |
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| Q |
320 |
tttctttagctccaaaagttggtatgaaattttcttctttgccttctttcttaaaatttcataagaagaaacattgttttcaatgctgtaatcacct |
416 |
Q |
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| T |
9385127 |
tttctttagctccaaaagttggtatgaaattttcttccttgccttctttctgaaattttcataagaagaaacactgttttcaatgcttgaatcacct |
9385223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 31947913 - 31948271
Alignment:
| Q |
20 |
accttcactattagaatgatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacatcatttttgttcttcccttctttc |
119 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
31947913 |
accttcactattagaataatcactatttttatcttttccaataagagaacacaaagcattgtttagatcctcaacctcatttttgttcttccc-tctttc |
31948011 |
T |
|
| Q |
120 |
tcataagagaaaaacaccataggcttcaacttcgaaatcaaagatgacccttttgttccaagtgctggcatagnnnnnnnnngtagtacagaacttaata |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |
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| T |
31948012 |
tcataagagaaaaacaccataggcttcaacttcgaaatcaaagatgacccttttgttccaagtgctggcatagacaaaaaaagtagcacaaaacttaata |
31948111 |
T |
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| Q |
220 |
tagatatagtgattgtgttcacttctcttaaaactctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatgagttaactttgttctgcat |
319 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31948112 |
tagatatagtgattgtgtttacttctcttaaaaccctaaccaaaaatgctagttgttgatcttgatcacaaagagaaaatgagttaactttgctctgcat |
31948211 |
T |
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| Q |
320 |
tttctttagctccaaaagttggtatgaaattttcttctttgccttctttcttaaaatttc |
379 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
31948212 |
tttctttagctccaaaaattggtatgaaattttcttctttgccttctttctgaaattttc |
31948271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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