View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6233_low_6 (Length: 400)
Name: NF6233_low_6
Description: NF6233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6233_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 5478542 - 5478897
Alignment:
| Q |
19 |
cgatcaccaaggaataaagaaacaatgattcaaattcatgagtcatatcacagtgtctcgaacaagttgaggattttgaacatacaccatgctgaagtgc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5478542 |
cgatcaccaaggaataaagaaacaatgattcaaattcatgagtcagatcacagtgtctcgaacaagttgaggattttgaacatacaccatgctgaagtgc |
5478641 |
T |
|
| Q |
119 |
tttatttgcaaatgaatcagaaaacttcagcagttgaattatcattccacggtaaacctcctctgagaaagatagaacatatgatacaaaggtagatttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5478642 |
tttatttgcaaatgaatcagaaaacttcagcagttgaattatcattccacggtaaacctcctctgagaaagatagatcatatgatacaaaggtagatttt |
5478741 |
T |
|
| Q |
219 |
ctggagacgccatcgtttagttgacgctcattgggaaatagtattctaatagcaactcatacttgcaattttcatgttctgactatccttgttcacttga |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
5478742 |
ctggagacgccatcgtatagttgacgctcattgggaaatagtattctaat-gcaactcatacttacaattttcatgttctgaccatccttgttcacttga |
5478840 |
T |
|
| Q |
319 |
tctctaagaaaatgaaaccttaaatgaaacattttagtttctgcgtccttgtaatat |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5478841 |
tctctaagaaaatgaaaccttaaatgaaacattttagtttccgcgtccttgtaatat |
5478897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 31402555 - 31402413
Alignment:
| Q |
22 |
tcaccaaggaataaagaaacaatgattcaaattcatgagtcatatcaca--gtgtctcgaacaagttgaggattttgaacatacaccatgctgaagtgct |
119 |
Q |
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||||||| |||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||||| ||||| ||||| ||| |
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| T |
31402555 |
tcaccaacgaatcaagaaacaatgattcaaattcatgaatcagatcacacagtgtctcgaacaagttgaggattttaaacatacgccatggtgaagggct |
31402456 |
T |
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| Q |
120 |
t-tatttgcaaatgaatcagaaaacttcagcagttgaattatc |
161 |
Q |
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| ||||||||| ||||||| ||| ||||| |||||||||||| |
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| T |
31402455 |
tcgatttgcaaacgaatcagcaaaattcagaagttgaattatc |
31402413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 8040189 - 8040051
Alignment:
| Q |
25 |
ccaaggaataaagaaacaatgattcaaattcatgagtcatatcaca--gtgtctcgaacaagttgaggattttgaacatacaccatgctgaagtgctt-t |
121 |
Q |
| |
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|||| |||| ||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||||||| |||||| |||| |||||| |||| |
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| T |
8040189 |
ccaatgaatcaagaaacaatgattcaaattcatgaatcagctcacacagtgtctcgaacaagttaaggattttaaacatataccaggctgaatggcttca |
8040090 |
T |
|
| Q |
122 |
atttgcaaatgaatcagaaaacttcagcagttgaattat |
160 |
Q |
| |
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| T |
8040089 |
atttgcaaacgaatcagcaaaaatcagcagttgaattat |
8040051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 8406055 - 8406138
Alignment:
| Q |
22 |
tcaccaaggaataaagaaacaatgattcaaattcatgagtcatat--cacagtgtctcgaacaagttgaggattttgaacatac |
103 |
Q |
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|||| ||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |
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| T |
8406055 |
tcactaaggaatcaagaaaaaatgattcaaattcatgagtcagatcacacagtgtctcgaacaagttgagaattttgaacatac |
8406138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 9137171 - 9137081
Alignment:
| Q |
72 |
tgtctcgaacaagttgaggattttgaacatacaccatgctgaagtgcttt-atttgcaaatgaatcagaaaacttcagcagttgaattatc |
161 |
Q |
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|||| ||||||||| |||||||| |||||| ||| ||||||| | || |||||||||| |||||||||| |||||||||||||||||| |
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| T |
9137171 |
tgtcgcgaacaagtcaaggattttaaacatatgccaggctgaagggtttcgatttgcaaataaatcagaaaaattcagcagttgaattatc |
9137081 |
T |
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