View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6235_low_1 (Length: 246)
Name: NF6235_low_1
Description: NF6235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6235_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 23749991 - 23749771
Alignment:
| Q |
8 |
cgaagaatattgaatggtatgaacaagatgtcagccaggtcattaaaggaagagaagatcactatacaagaaatctgaaatttgtggccaatttggattt |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23749991 |
cgaagtatattgaatggtatgaacaagatgtcagccaggtcattaaaggaagagaagatcactatacaagaaatctgaaatttgtggccaatttggattt |
23749892 |
T |
|
| Q |
108 |
atcaaacaacaatttgagtggacctattcctaaagaaataactcttcttactgctttacgaggcctaaatctgtcacataataatctgtcaggggaaatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
23749891 |
atcaaacaacaatttgagtggacctattccaaaagaaataactcttcttactgctttacgaggcctaaatctgtcacataatcatttgtcaggggaaatt |
23749792 |
T |
|
| Q |
208 |
cctacaaccataggagacatg |
228 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23749791 |
cctacaaccataggagacatg |
23749771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 23850692 - 23850472
Alignment:
| Q |
8 |
cgaagaatattgaatggtatgaacaagatgtcagccaggtcattaaaggaagagaagatcactatacaagaaatctgaaatttgtggccaatttggattt |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23850692 |
cgaagtatattgaatggtatgaacaagatgtcagccaggtcattaaaggaagagaagatcactatacaagaaatctgaaatttgtggccaatttggattt |
23850593 |
T |
|
| Q |
108 |
atcaaacaacaatttgagtggacctattcctaaagaaataactcttcttactgctttacgaggcctaaatctgtcacataataatctgtcaggggaaatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
23850592 |
atcaaacaacaatttgagtggacctattcctaaagaaataactcttcttactgctttacgaggcctaaatctgtcacataatcatttgtcaggggaaatt |
23850493 |
T |
|
| Q |
208 |
cctacaaccataggagacatg |
228 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
23850492 |
cctacaaccataggggacatg |
23850472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 22617378 - 22617164
Alignment:
| Q |
14 |
atattgaatggtatgaacaagatgtcagccaggtcattaaaggaagagaagatcactatacaagaaatctgaaatttgtggccaatttggatttatcaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
22617378 |
atattgaatggtatgaacaagatgtcagccaggtcattaaaggaagagaagatcattatacaagaaatttgaaatttgtggccaatgtggatttatcaaa |
22617279 |
T |
|
| Q |
114 |
caacaatttgagtggacctattcctaaagaaataactcttcttactgctttacgaggcctaaatctgtcacataataatctgtcaggggaaattcctaca |
213 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| || ||||||| |||||||||||| |
|
|
| T |
22617278 |
caacagtttgagtggacctattcctaaagaaataactcttctgactgctttacgaggcctaaacctgtcacacaatcatttgtcaggtgaaattcctaca |
22617179 |
T |
|
| Q |
214 |
accataggagacatg |
228 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
22617178 |
gccataggggacatg |
22617164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 20573979 - 20574193
Alignment:
| Q |
14 |
atattgaatggtatgaacaagatgtcagccaggtcattaaaggaagagaagatcactatacaagaaatctgaaatttgtggccaatttggatttatcaaa |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
20573979 |
atattgaatggtatgagcaagatgtcagccaggtcattaaaggaagagaagatcattatacaagaaatttgaaatttgtggccaatgtggatttatcaaa |
20574078 |
T |
|
| Q |
114 |
caacaatttgagtggacctattcctaaagaaataactcttcttactgctttacgaggcctaaatctgtcacataataatctgtcaggggaaattcctaca |
213 |
Q |
| |
|
||||| ||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
20574079 |
caacagtttgactggatctattccaaaagaaataactcttcttactgctttacgagaactaaatctgtcacacaatcatctgtcaggtgaaattcctaca |
20574178 |
T |
|
| Q |
214 |
accataggagacatg |
228 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
20574179 |
gccataggggacatg |
20574193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University