View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6236_high_13 (Length: 307)
Name: NF6236_high_13
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6236_high_13 |
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| [»] scaffold0291 (1 HSPs) |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 7915272 - 7915562
Alignment:
| Q |
1 |
aaaagaggatgtgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915272 |
aaaagaggatgtgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacat |
7915371 |
T |
|
| Q |
101 |
cacacgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915372 |
cacacgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagct |
7915471 |
T |
|
| Q |
201 |
ctaccaagcctcattgcaacaatattcattgcttggtaccttaagttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7915472 |
ctaccaagcctcattgcaacaatattcattgcttggtaccttaagttgtcaatttgattaactgtgaaaggttgtaaataatgcatctttg |
7915562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 7834031 - 7833874
Alignment:
| Q |
1 |
aaaagaggatgtgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacat |
100 |
Q |
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||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| || || || ||| || |||||||||| |
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| T |
7834031 |
aaaagaggatgtgaactagaattgacgtgatgtgattcttccaatgacaaacatcattgaaccatcttccgatggtcattaatccgaaggaaagggacat |
7833932 |
T |
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| Q |
101 |
cacacgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatcc |
158 |
Q |
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| T |
7833931 |
cacacgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatcc |
7833874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 171 - 291
Target Start/End: Complemental strand, 7833747 - 7833627
Alignment:
| Q |
171 |
acaatttccttcctgagtggcggttcagctctaccaagcctcattgcaacaatattcattgcttggtaccttaagttgtcaatttgattaactgcgaaag |
270 |
Q |
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|||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7833747 |
acaacttccttccaaagtggaggttcagctctacccagcctcattgctacaatattcgttgcttggtaccttaagttgtcaatttgattaactgtgaaag |
7833648 |
T |
|
| Q |
271 |
gttgtaaataatgcatctttg |
291 |
Q |
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||||||||||||||| ||||| |
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| T |
7833647 |
gttgtaaataatgcaactttg |
7833627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 7833013 - 7833158
Alignment:
| Q |
1 |
aaaagaggatgtgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || | ||||||||||||| |||||| |||| |
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| T |
7833013 |
aaaagaggatgtgaactagtattgatgtaatgtgattctttgaatgacaaacatcattgaaccatctcccaaatgtgatcaaaccgaagaaaaataacat |
7833112 |
T |
|
| Q |
101 |
cacacgaaagaagttagctttgcttcttctcatgctccatatattg |
146 |
Q |
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|| | ||||||||||| ||| ||| ||||||||||||||| |||| |
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| T |
7833113 |
caagctaaagaagttaggtttccttgttctcatgctccataaattg |
7833158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 7882635 - 7882683
Alignment:
| Q |
242 |
taagttgtcaatttgattaactgcgaaaggttgtaaataatgcatcttt |
290 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7882635 |
taagttgtcaatttgattaactgtgaaaggttgtaaataatgcatcttt |
7882683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 7880519 - 7880573
Alignment:
| Q |
105 |
cgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatcca |
159 |
Q |
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|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
7880519 |
cgaaagaagttagcattgcttcttctcatgctcagtatattggaatcaacatcca |
7880573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 291
Target Start/End: Original strand, 8415799 - 8416000
Alignment:
| Q |
90 |
aaaagggacatcacacgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtg |
189 |
Q |
| |
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||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||| | |||||||||||| || ||||| || | |
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| T |
8415799 |
aaaagcgacatcatgcgaaagaagttggctttgcttcttctcatgctccacatatgtgaatcaacatctaacatgtactcaactgcctctttcctaagag |
8415898 |
T |
|
| Q |
190 |
gcggttcagctctaccaagcctcattgcaacaatattcattgcttggtaccttaagttgtcaatttgattaactgcgaaaggttgtaaataatgcatctt |
289 |
Q |
| |
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| ||||| |||||||| |||||||| || || |||||||| |||||||||||||| || |||| ||||||||||| ||| || ||||||||||||||| |
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| T |
8415899 |
gaggttcggctctacctagcctcatagctacgatattcatcgcttggtaccttaaattttcaacttgattaactgtgaagggacttaaataatgcatctt |
8415998 |
T |
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| Q |
290 |
tg |
291 |
Q |
| |
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|| |
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| T |
8415999 |
tg |
8416000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 3186 - 3304
Alignment:
| Q |
117 |
gctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagctctaccaagcctcattg |
216 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| ||||| |||||||||||||| | ||| ||||| || || ||||| ||||| || ||||||| || |
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| T |
3186 |
gctttgcttcttcttaaactccatatatgtgaatccacatcaagcatgtactcaactacttctttcctaagaggtggttctgctcttcctagcctcactg |
3285 |
T |
|
| Q |
217 |
caacaatattcattgcttg |
235 |
Q |
| |
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| || |||||||| ||||| |
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| T |
3286 |
ctacgatattcatagcttg |
3304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 13227 - 13291
Alignment:
| Q |
108 |
aagaagttagctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaac |
172 |
Q |
| |
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||||| ||||| |||||||||||||| ||||| || | |||| ||||||| ||||| |||||||| |
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| T |
13227 |
aagaaattagccttgcttcttctcatactccacatgtgggaaccaacatcaagcatatactcaac |
13291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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