View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6236_high_17 (Length: 243)

Name: NF6236_high_17
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6236_high_17
NF6236_high_17
[»] chr1 (2 HSPs)
chr1 (67-222)||(26832042-26832197)
chr1 (141-193)||(10629409-10629461)
[»] chr6 (1 HSPs)
chr6 (144-181)||(3218632-3218669)
[»] chr8 (1 HSPs)
chr8 (134-182)||(24074542-24074590)
[»] chr5 (1 HSPs)
chr5 (134-182)||(14487597-14487645)
[»] chr4 (1 HSPs)
chr4 (134-182)||(42488745-42488793)
[»] chr3 (1 HSPs)
chr3 (139-183)||(31435511-31435555)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 26832197 - 26832042
Alignment:
Q  67 gagtattatgaatgcttagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatctaggggttgaggttcgaacctcggactt 166  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  26832197 gagtattatggatgctaagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatccaggggttgaggttcaaacctcggactt 26832098  T
Q  167 ctcacttattcacctttcgatgaatttccaactactaggatgatatagtgcatata 222  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  26832097 ctcacttattcacttttagatgaatttccaactactaggatgatatagtgcatata 26832042  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 10629409 - 10629461
Alignment:
Q  141 ggggttgaggttcgaacctcggacttctcacttattcacctttcgatgaattt 193  Q
    ||||||| |||||||||||||||| || || |||||||||||| |||||||||    
T  10629409 ggggttggggttcgaacctcggacatcccatttattcacctttagatgaattt 10629461  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 3218632 - 3218669
Alignment:
Q  144 gttgaggttcgaacctcggacttctcacttattcacct 181  Q
    |||||||||||||||||| |||||||||||||||||||    
T  3218632 gttgaggttcgaacctcgaacttctcacttattcacct 3218669  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 24074542 - 24074590
Alignment:
Q  134 atatctaggggttgaggttcgaacctcggacttctcacttattcacctt 182  Q
    |||| |||||||||| |||||||||||||||  ||||||||||||||||    
T  24074542 atatgtaggggttgaagttcgaacctcggacacctcacttattcacctt 24074590  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 14487597 - 14487645
Alignment:
Q  134 atatctaggggttgaggttcgaacctcggacttctcacttattcacctt 182  Q
    |||| ||||||||| |||||||||||||||  || ||||||||||||||    
T  14487597 atatgtaggggttggggttcgaacctcggatatcccacttattcacctt 14487645  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 42488745 - 42488793
Alignment:
Q  134 atatctaggggttgaggttcgaacctcggacttctcacttattcacctt 182  Q
    |||| ||||||||| ||||| ||||||||||  ||||||||||||||||    
T  42488745 atatgtaggggttggggttcaaacctcggacgcctcacttattcacctt 42488793  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 31435555 - 31435511
Alignment:
Q  139 taggggttgaggttcgaacctcggacttctcacttattcaccttt 183  Q
    ||||||||| |||||||||||||||| || |||||||||| ||||    
T  31435555 taggggttggggttcgaacctcggacatcccacttattcatcttt 31435511  T

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