View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6236_high_3 (Length: 488)
Name: NF6236_high_3
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6236_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 5 - 468
Target Start/End: Complemental strand, 40517893 - 40517430
Alignment:
| Q |
5 |
agatggacatcatcaacaacggcacctcggaacctccacacaacaacaacaacggttttgacgcaaatgggttcacatatatcttaatacttgtatttgg |
104 |
Q |
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| T |
40517893 |
agatgaacatcgacaacaacggcacctcggaacctccacacaacaacaacaacggttttgacgcaaatgggttcacatatatcttaatacttgtatttgg |
40517794 |
T |
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| Q |
105 |
tctcgtattcttggttctttcaatagttattgcatgtgttcgacttcgtagttcacgaagtcgaaacattctcaatattttgtctggttttccaccacat |
204 |
Q |
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| T |
40517793 |
tctcgtattcttggttctttcaatagttattgcatgtgttcgacttcgtagttcacgaagtcgaaacattctcaatattttgtccggttttccaccacat |
40517694 |
T |
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| Q |
205 |
cgtcatgaagactcaatcatggaacaaggacttcgtcatcacaccgacacaagttttgaaggatacccgaaactgttatactctcaaattcagaagaatg |
304 |
Q |
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| T |
40517693 |
cgtcatgaagactcaatcatggaacaaggacttcgtcatcacaccgacacaagttttgaaggatacccgaaactgttatactctcaaattcagaagaatg |
40517594 |
T |
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| Q |
305 |
gttcttcaacttcaattagttgctctatttgcttaggagattataaagaaagtgacatgttgaggttacttccagattgtggtcatctttatcatgttgc |
404 |
Q |
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| T |
40517593 |
gttcttcaacttcaattagttgctctatttgcttaggagattataaagaaagtgacatgttgaggttacttccagattgtggtcatctttatcatgttgc |
40517494 |
T |
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| Q |
405 |
ttgtgttgatccatggctcgtgttacattccacttgtcccatatgtagaaaatcatcactagct |
468 |
Q |
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| T |
40517493 |
ttgtgttgatccatggctcgtgttacattccacttgtcccatatgtagaaaatcatcactagct |
40517430 |
T |
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