View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6236_high_4 (Length: 420)
Name: NF6236_high_4
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6236_high_4 |
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| [»] scaffold0108 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 35 - 410
Target Start/End: Original strand, 12416006 - 12416381
Alignment:
| Q |
35 |
aattttaatcaaacagggttttaaatccaatataccatggagattatccacaaataatgagaaaattagtagggaataggttgcctgaattcactaaaaa |
134 |
Q |
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| T |
12416006 |
aattttaatcaaacagggttttaaatccaatataccatggagattatccacaaataatgagaaaattagtagggaataggttgcctgaattcactaaaaa |
12416105 |
T |
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| Q |
135 |
ggagaaacatatgctcaaaggaagtttagactttatcggagtcaattattatatgtctatctttgctagacatgaatcaaatagaagcaaaatgttctat |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12416106 |
ggagaaacatatgctcaaaggaagtttagactttatcggagtcaattattatatgtctatctttgctagacatgaatcaaatagaagcaaaatgtactat |
12416205 |
T |
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| Q |
235 |
attgacaattttgatgcattagctgcaactacaggtaagctaatatttctcgaactacattttaattatatgatatgaataatagaaaggaaattctaca |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12416206 |
attgacaattttgatgcattagctgcaactacaggtaagctaatatttctcgaactacattttaattatatgatatgaataatagaaaggaagttctaca |
12416305 |
T |
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| Q |
335 |
atcatattcactaattcttgctcattctttcacaattgtagaatttaatgcagaaggaaatacccttggacctatg |
410 |
Q |
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| T |
12416306 |
atcatattcactaattcttgctcattctttcacaattgtagaatttaatgcagaaggaaatacccttggacctatg |
12416381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 18090776 - 18090603
Alignment:
| Q |
47 |
acagggttttaaatccaatataccatggagattatccacaaataatgagaaaattagtagggaataggttgcctgaattcactaaaaaggagaaacatat |
146 |
Q |
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| T |
18090776 |
acagggttttagagccattgttccatggggattatccacaaataatgagaaagctagtggggaaaagattacccaaattcactaaaaacgagaaagaaat |
18090677 |
T |
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| Q |
147 |
gctcaaaggaagtttagactttatcggagtcaattattatatgtctatctttgctagacatgaatcaaatagaa |
220 |
Q |
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| T |
18090676 |
gttgaaaggaagcatagactttattggaatcaattattatagttctcactatgttagacatgaaccaaatagaa |
18090603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 18122504 - 18122360
Alignment:
| Q |
76 |
gattatccacaaataatgagaaaattagtagggaataggttgcctgaattcactaaaaaggagaaacatatgctcaaaggaagtttagactttatcggag |
175 |
Q |
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| T |
18122504 |
gattatccaaaaataatgagaaagttagtggggaaaagactacccgaattcactaaaaatgagaaagaaatgttgaaaggaagtacagactttattggga |
18122405 |
T |
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| Q |
176 |
tcaattattatatgtctatctttgctagacatgaatcaaatagaa |
220 |
Q |
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| T |
18122404 |
tcaattattatttttctctctttgttagacatgaaccaaatagaa |
18122360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 18060723 - 18060550
Alignment:
| Q |
47 |
acagggttttaaatccaatataccatggagattatccacaaataatgagaaaattagtagggaataggttgcctgaattcactaaaaaggagaaacatat |
146 |
Q |
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||||||||||| | ||| | | |||||| ||||||||||||||||||||||| |||| || || || | || ||||||||||||| |||||| | || |
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| T |
18060723 |
acagggttttagagccattgttccatggggattatccacaaataatgagaaagctagtgggaaaaagactacccaaattcactaaaaatgagaaagaaat |
18060624 |
T |
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| Q |
147 |
gctcaaaggaagtttagactttatcggagtcaattattatatgtctatctttgctagacatgaatcaaatagaa |
220 |
Q |
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| T |
18060623 |
gttgaaaggaagcatagactttattggaattaattattatacttctcactttgttagacatgaaccaaatagaa |
18060550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 20397193 - 20397346
Alignment:
| Q |
71 |
atggagattatccacaaataatgagaaaattagtagggaataggttgcctgaattcactaaaaaggagaaacatatgctcaaaggaagtttagactttat |
170 |
Q |
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|||| ||||||||| ||||||||||||| |||| ||||| || | || |||||||||||||| |||||| | || | ||||||||| ||||||||| |
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| T |
20397193 |
atggggattatccaaaaataatgagaaagctagtggggaaaagactacccgaattcactaaaaatgagaaagaaatattgaaaggaagtacagactttat |
20397292 |
T |
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| Q |
171 |
cggagtcaattattatatgtctatctttgctagacatgaatcaaatagaagcaa |
224 |
Q |
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| T |
20397293 |
tgggatcaattattattactctctctttgttagatatgaaccaaataaaagcaa |
20397346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 37 - 284
Target Start/End: Original strand, 16945 - 17192
Alignment:
| Q |
37 |
ttttaatcaaacagggttttaaatccaatataccatggagattatccacaaataatgagaaaattagtagggaataggttgcctgaattcactaaaaagg |
136 |
Q |
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|||| |||||||||||||||| | ||||||||| | ||||||||||||||||| |||||||| ||||| |||||||| ||||| | ||||||||||||| |
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| T |
16945 |
ttttgatcaaacagggttttagacccaatatactacggagattatccacaaatcatgagaaagttagtggggaatagattgcccaagttcactaaaaagg |
17044 |
T |
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| Q |
137 |
agaaacatatgctcaaaggaagtttagactttatcggagtcaattattatatgtctatctttgctagacatgaatcaaatagaagcaaaatgttctatat |
236 |
Q |
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|| || ||||| |||||||||||||||||||| | ||||||||||||||| ||| | ||||| ||||||||||||||||||||||| |||||| | | |
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| T |
17045 |
aggaaaatatgatcaaaggaagtttagactttgtgggagtcaattattattattctgtttttgccagacatgaatcaaatagaagcaatatgttccctct |
17144 |
T |
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| Q |
237 |
tgacaattttgatgcattagctgcaactacaggtaagctaatatttct |
284 |
Q |
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| T |
17145 |
tgacaattttgatgccttagctgcaactaatggtaagctaatatttct |
17192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 17241 - 17273
Alignment:
| Q |
362 |
tttcacaattgtagaatttaatgcagaaggaaa |
394 |
Q |
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| T |
17241 |
tttcacaattgtagaatttaatgcagaaggaaa |
17273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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