View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6236_high_6 (Length: 368)
Name: NF6236_high_6
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6236_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 35331620 - 35331981
Alignment:
| Q |
1 |
agcacaactgacaaacattgcaacataaaccaacataacaaatgttccaatgccttttgtcagctaaatgttccagttcttatggt-----aagctgcat |
95 |
Q |
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| T |
35331620 |
agcacaactgacaaacattgcaacataaaccaacataacaaatgttccaatgccttttgtcagctaaatgttccagttcttatggttaaataagctgcat |
35331719 |
T |
|
| Q |
96 |
aaaattaaagtaaactaaaacctccctatgaaccactccacttagaggttgaaaccaataataatttgagaaaataaacatgattaacttccttaaagat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35331720 |
aaaattaaagtaaactaaaacctccctatgaaccactccacttacaggttgaaactgataataatttgagaaaataaacatgattaacttccttaaagat |
35331819 |
T |
|
| Q |
196 |
agtcacacattttcaatctgatgtgtcgatgctaaatcgaaatctcccccaaaaaatggggcccgatctactatctttaaggcgggaaagacacgatgat |
295 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35331820 |
agtcacacattttcaatctaatgtgtcgatgctaaatcgaaatctcccccaaaaaatggggcccgatctactatctttaaggcgggaaagacacgatgat |
35331919 |
T |
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| Q |
296 |
tttgtgtcattctcctatattgatattgatatctctaatcttatttattatttctttttcat |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35331920 |
tttgtgtcattctcctatattgatattgatatctctaatcatatttattatttctttttcat |
35331981 |
T |
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