View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6236_low_1 (Length: 547)
Name: NF6236_low_1
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6236_low_1 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 188 - 547
Target Start/End: Complemental strand, 3897297 - 3896938
Alignment:
| Q |
188 |
gttgtgattgtttgaaggatattgctacggcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaat |
287 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897297 |
gttgtgattgtttgaaggatattgctgcggcagatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaat |
3897198 |
T |
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| Q |
288 |
tcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcact |
387 |
Q |
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| T |
3897197 |
tcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcact |
3897098 |
T |
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| Q |
388 |
atgaagttatactaatagttgtgttcttcctttaatttgtgatgaatgttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaattaa |
487 |
Q |
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| T |
3897097 |
atgaagttatactaatagttgtgttcttccattaatttgtgatgaatgttttctatgaagcacggatacgtcaacaatgataatagtttgagaaaattaa |
3896998 |
T |
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| Q |
488 |
taatattgcatgtaattatatgtgtcggtgaatgaacaaaggcctattcttatcaaatgc |
547 |
Q |
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| T |
3896997 |
taatattgcatgtaattatatgtgtcggtgaatgaacaaagacctattcttatcaaatgc |
3896938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 3898797 - 3898713
Alignment:
| Q |
11 |
caaaggtatatggctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattattttgtcttacaaggctgcacagg |
95 |
Q |
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| T |
3898797 |
caaaggtatatggctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattatcttgtcttacaaggctgcacagg |
3898713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 202 - 351
Target Start/End: Original strand, 46283646 - 46283795
Alignment:
| Q |
202 |
aaggatattgctacggcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttg |
301 |
Q |
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|||||||||||| | |||||||||| ||| |||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||| || | | || |
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| T |
46283646 |
aaggatattgctgctgcggatcttccatcaactcatcctataagattgggtttggctctcaatttctctgttttctattacgaaattctcaatcaatctg |
46283745 |
T |
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| Q |
302 |
acgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgttt |
351 |
Q |
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| T |
46283746 |
acaaagcttgtgacatggccaaacaggtttgtgttaatctgatcttgttt |
46283795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 46283490 - 46283571
Alignment:
| Q |
14 |
aggtatatggctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattattttgtcttacaaggctgcacagg |
95 |
Q |
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| T |
46283490 |
aggtatttggctgagtttaagattggtgatgagaaaaaatctgctgctgaggatactatgttgtcttacaaagctgcacagg |
46283571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 188 - 547
Target Start/End: Complemental strand, 4953 - 4592
Alignment:
| Q |
188 |
gttgtgattgtttgaaggatattgctacggcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaat |
287 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953 |
gttgtgattgtttgaaggatattgctgctgcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaat |
4854 |
T |
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| Q |
288 |
tcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcact |
387 |
Q |
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| T |
4853 |
tcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcact |
4754 |
T |
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| Q |
388 |
atgaagttatactaatagttgtgttcttcctttaatttgtgatgaatgttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaattaa |
487 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4753 |
atgaagttatactaatagttgtgttcttccattaatttgtgatgaatgttttctatgaagcacggatacgtcaacaatgataatagtttgagaaaattaa |
4654 |
T |
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| Q |
488 |
taatatt--gcatgtaattatatgtgtcggtgaatgaacaaaggcctattcttatcaaatgc |
547 |
Q |
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| T |
4653 |
taatattaagcatgtaattatatgtgtaggtgaatgaacaaaggcctattcttatcaaatgc |
4592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 5128 - 5044
Alignment:
| Q |
11 |
caaaggtatatggctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattattttgtcttacaaggctgcacagg |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5128 |
caaaggtatatggctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattatcttgtcttacaaggctgcacagg |
5044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 39356450 - 39356413
Alignment:
| Q |
247 |
ttgggtttggctttgaatttctcggttttctattatga |
284 |
Q |
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|||||| |||||||||||||||| |||||||||||||| |
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| T |
39356450 |
ttgggtctggctttgaatttctcagttttctattatga |
39356413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 24806921 - 24806969
Alignment:
| Q |
436 |
ttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaat |
484 |
Q |
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|||||||| ||||||||||||||||||| ||||| | ||||||||||| |
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| T |
24806921 |
ttttctatcaagcacggacacgtcaacatggataaaattttgagaaaat |
24806969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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