View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6236_low_10 (Length: 344)

Name: NF6236_low_10
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6236_low_10
NF6236_low_10
[»] chr4 (5 HSPs)
chr4 (15-336)||(17769427-17769747)
chr4 (246-335)||(24929459-24929547)
chr4 (244-281)||(29601022-29601059)
chr4 (215-268)||(47118950-47119003)
chr4 (201-281)||(50742809-50742887)
[»] chr2 (4 HSPs)
chr2 (215-335)||(33256706-33256825)
chr2 (245-330)||(13736308-13736392)
chr2 (215-264)||(680539-680588)
chr2 (241-281)||(24141662-24141702)
[»] chr8 (5 HSPs)
chr8 (224-335)||(26716432-26716542)
chr8 (247-330)||(29973052-29973134)
chr8 (245-280)||(31862513-31862548)
chr8 (215-279)||(13459666-13459730)
chr8 (245-281)||(20672769-20672805)
[»] chr5 (3 HSPs)
chr5 (215-330)||(17258868-17258982)
chr5 (245-335)||(28586781-28586870)
chr5 (221-270)||(12467163-12467212)
[»] chr1 (6 HSPs)
chr1 (219-273)||(31517729-31517783)
chr1 (229-272)||(2462980-2463023)
chr1 (246-281)||(25479600-25479635)
chr1 (248-281)||(33975589-33975622)
chr1 (220-280)||(3223688-3223747)
chr1 (216-272)||(37593670-37593726)
[»] chr7 (5 HSPs)
chr7 (215-268)||(19719038-19719091)
chr7 (220-278)||(12234879-12234937)
chr7 (215-273)||(25670571-25670629)
chr7 (248-281)||(21453313-21453346)
chr7 (215-272)||(46104552-46104609)
[»] chr3 (2 HSPs)
chr3 (219-273)||(41633387-41633441)
chr3 (244-281)||(6483820-6483857)
[»] chr6 (2 HSPs)
chr6 (201-281)||(31686336-31686414)
chr6 (295-335)||(2027470-2027510)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 17769427 - 17769747
Alignment:
Q  15 atggacattctaactaaggatttatcaatattctat-ctggatttccctcaatgcaactaatctaaattagcatatctcattacttctaacttctaaata 113  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17769427 atggacattctaactaaggatttatcaatattctaaactggatttccctcaatgcaactaatctaaattagcatatctcattacttctaacttctaaata 17769526  T
Q  114 gacacatcaaataacatatagaccatgggcctatttagattagctcatttgagcttatatactcctatactagcattagcacacacttttgagagaactt 213  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||  |||||||||||||||||||    
T  17769527 gacacgtcaaataacatatagaccatgggcctatttagattaactcatttgagcttatatactattatactagcattag--cacacttttgagagaactt 17769624  T
Q  214 atatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| |||||    
T  17769625 atatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctacgaaaactgcttacaggttttatgaaa 17769724  T
Q  314 atagtttgactttatttcatctc 336  Q
    |||||||||||||||||||||||    
T  17769725 atagtttgactttatttcatctc 17769747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 335
Target Start/End: Complemental strand, 24929547 - 24929459
Alignment:
Q  246 tgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgactttatttcatct 335  Q
    |||||||||||||| | |||||||||||||| | | || ||| |||||  ||||||| |||| |||||| |||| |||||||||| ||||    
T  24929547 tgttttcagcttatttccataagctctctagtaga-gtttatgaaaacaacttatagcttttatgaaaacagttagactttattttatct 24929459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 29601022 - 29601059
Alignment:
Q  244 actgttttcagcttatcttcataagctctctaggatag 281  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  29601022 actgttttcagcttattttcataagttctctaggatag 29601059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 47118950 - 47119003
Alignment:
Q  215 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataag 268  Q
    |||||||||||||||||||||  |||  |  |||||||||||||||||||||||    
T  47118950 tatgaaaacaactcatgacattgttattggttgttttcagcttatcttcataag 47119003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 50742809 - 50742887
Alignment:
Q  201 tttgagagaacttatatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggatag 281  Q
    |||||||||||||||  |||||||  |||||||||||| | |  ||||||||| || || ||||||||||||| |||||||    
T  50742809 tttgagagaacttat--gaaaacagttcatgacatgttcataccctgttttcaactcattttcataagctctccaggatag 50742887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 335
Target Start/End: Complemental strand, 33256825 - 33256706
Alignment:
Q  215 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaa 314  Q
    |||||||||| || |||||||||| | | |||||| ||||||||| |||||| | |||  ||||| | | ||| |||||||||||||| || | ||||||    
T  33256825 tatgaaaacagcttatgacatgttcataaactgttctcagcttattttcatacggtcttcaggatggct-tatgaaaactgcttatagtttatatgaaaa 33256727  T
Q  315 tagtttgactttatttcatct 335  Q
     ||||||||||||||| ||||    
T  33256726 cagtttgactttattttatct 33256706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 13736308 - 13736392
Alignment:
Q  245 ctgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgactttattt 330  Q
    |||||||||  |||| |||||||||||||||| |||| | ||| ||||| |||||||| |  ||||||||||||||||||| ||||    
T  13736308 ctgttttcaagttattttcataagctctctagtatagct-tatgaaaacagcttatagctgatgtgaaaatagtttgacttcattt 13736392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 680588 - 680539
Alignment:
Q  215 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttca 264  Q
    |||||||||| || |||||||||||| | |||||||||||||||| ||||    
T  680588 tatgaaaacagcttatgacatgtttataaactgttttcagcttattttca 680539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 24141662 - 24141702
Alignment:
Q  241 gagactgttttcagcttatcttcataagctctctaggatag 281  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  24141662 gagactgttttcagcttgttttcataagctctataggatag 24141702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 335
Target Start/End: Original strand, 26716432 - 26716542
Alignment:
Q  224 aactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgac 323  Q
    ||||||| ||||||||  |  ||||||||||||||| | | ||| |||||||||||||||| || ||||   ||||||| |||||| |||||| ||||||    
T  26716432 aactcataacatgtttgtaagctgttttcagcttatttccgtaacctctctaggataggtc-attaaaaaatcttatagcttttgtaaaaataatttgac 26716530  T
Q  324 tttatttcatct 335  Q
    ||||||| ||||    
T  26716531 tttatttaatct 26716542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 29973134 - 29973052
Alignment:
Q  247 gttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgactttattt 330  Q
    |||||||| |||| | ||||| ||||| ||||||| | ||| |||||  ||||||| || ||||||||||||||||||||||||    
T  29973134 gttttcagtttatttccataaactctcaaggatagct-tatgaaaacaacttatagcttatgtgaaaatagtttgactttattt 29973052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 280
Target Start/End: Complemental strand, 31862548 - 31862513
Alignment:
Q  245 ctgttttcagcttatcttcataagctctctaggata 280  Q
    ||||||||||||||| ||||||||||||||||||||    
T  31862548 ctgttttcagcttattttcataagctctctaggata 31862513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 13459730 - 13459666
Alignment:
Q  215 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggat 279  Q
    |||||||||| || ||||||| || | | |||||||||||| ||| |||||||||||| ||||||    
T  13459730 tatgaaaacagcttatgacattttcataaactgttttcagcctattttcataagctctgtaggat 13459666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 20672805 - 20672769
Alignment:
Q  245 ctgttttcagcttatcttcataagctctctaggatag 281  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  20672805 ctgttttcagcttattttcataagctctccaggatag 20672769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 330
Target Start/End: Original strand, 17258868 - 17258982
Alignment:
Q  215 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaa 314  Q
    |||||||| | || |||||||||| | |  ||||||||||||||| ||||||||||||  |||||| || ||| ||||| |||||| | || |  |||||    
T  17258868 tatgaaaatagcttatgacatgttcataagctgttttcagcttattttcataagctcttcaggata-gtttatgaaaacagcttattgattgtacgaaaa 17258966  T
Q  315 tagtttgactttattt 330  Q
    ||||||||||||||||    
T  17258967 tagtttgactttattt 17258982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 335
Target Start/End: Original strand, 28586781 - 28586870
Alignment:
Q  245 ctgttttcagcttatcttcataagctctctaggataggtctatcaaaactgcttataggttttgtgaaaatagtttgactttatttcatct 335  Q
    ||||||||||||||| |  |||||||||||||||||| ||  ||||||| |||||||  || | |||||| ||||||||||||||| ||||    
T  28586781 ctgttttcagcttatttcgataagctctctaggatagctc-gtcaaaacagcttataatttatatgaaaacagtttgactttattttatct 28586870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 12467212 - 12467163
Alignment:
Q  221 aacaactcatgacatgtttagagactgttttcagcttatcttcataagct 270  Q
    ||||||| |||||||||||| |  ||||||||||||||| ||||||||||    
T  12467212 aacaacttatgacatgtttataagctgttttcagcttattttcataagct 12467163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 31517729 - 31517783
Alignment:
Q  219 aaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctc 273  Q
    |||||||||||||||||||| | |  ||||||||||||||| |||||||||||||    
T  31517729 aaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctc 31517783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 2463023 - 2462980
Alignment:
Q  229 atgacatgtttagagactgttttcagcttatcttcataagctct 272  Q
    |||||||||||| |||||||||||||||||| |||| |||||||    
T  2463023 atgacatgtttatagactgttttcagcttattttcacaagctct 2462980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 25479635 - 25479600
Alignment:
Q  246 tgttttcagcttatcttcataagctctctaggatag 281  Q
    |||||||||||||| |||||||||||||||||||||    
T  25479635 tgttttcagcttattttcataagctctctaggatag 25479600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 33975622 - 33975589
Alignment:
Q  248 ttttcagcttatcttcataagctctctaggatag 281  Q
    |||||||||||| |||||||||||||||||||||    
T  33975622 ttttcagcttattttcataagctctctaggatag 33975589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 3223747 - 3223688
Alignment:
Q  220 aaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggata 280  Q
    |||||||| |||||||||||| |   |||||||||||||| ||||||||||| ||||||||    
T  3223747 aaacaacttatgacatgtttataagttgttttcagcttat-ttcataagctcgctaggata 3223688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 37593670 - 37593726
Alignment:
Q  216 atgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctct 272  Q
    ||||| |||||| |||||||||| | |  ||||||||||||||| ||||||||||||    
T  37593670 atgaacacaacttatgacatgttcataagctgttttcagcttattttcataagctct 37593726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 19719091 - 19719038
Alignment:
Q  215 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataag 268  Q
    ||||||||||||| |||||||||| | | ||||||||||||||||||| |||||    
T  19719091 tatgaaaacaacttatgacatgttcataaactgttttcagcttatctttataag 19719038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 12234879 - 12234937
Alignment:
Q  220 aaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctagga 278  Q
    |||||||| ||||||||| || |  ||||||||||||||| | ||||||||||||||||    
T  12234879 aaacaacttatgacatgtctataagctgttttcagcttatttccataagctctctagga 12234937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 25670571 - 25670629
Alignment:
Q  215 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctc 273  Q
    ||||||||||||| |||||||||| | | | |||||||||||||| |||| ||||||||    
T  25670571 tatgaaaacaacttatgacatgttaataaattgttttcagcttattttcacaagctctc 25670629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 21453346 - 21453313
Alignment:
Q  248 ttttcagcttatcttcataagctctctaggatag 281  Q
    |||||||||||||||||| |||||||||||||||    
T  21453346 ttttcagcttatcttcattagctctctaggatag 21453313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 46104552 - 46104609
Alignment:
Q  215 tatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctct 272  Q
    |||||||||||||||||||||||  | | | ||||| |||||||| ||||||||||||    
T  46104552 tatgaaaacaactcatgacatgtcaataaaatgtttccagcttattttcataagctct 46104609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 41633441 - 41633387
Alignment:
Q  219 aaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctc 273  Q
    ||||||| ||||||||||| || | | |||||||||||||| |||||||||||||    
T  41633441 aaaacaaatcatgacatgtctataaattgttttcagcttattttcataagctctc 41633387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 6483857 - 6483820
Alignment:
Q  244 actgttttcagcttatcttcataagctctctaggatag 281  Q
    |||||||||||||||| || ||||||||||||||||||    
T  6483857 actgttttcagcttattttaataagctctctaggatag 6483820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 31686336 - 31686414
Alignment:
Q  201 tttgagagaacttatatgaaaacaactcatgacatgtttagagactgttttcagcttatcttcataagctctctaggatag 281  Q
    |||||||||||||||   ||||||||| |||||| ||||| |  ||||||||||||||| | | ||||||||| |||||||    
T  31686336 tttgagagaacttatc--aaaacaacttatgacaagtttataatctgttttcagcttatgtccgtaagctctccaggatag 31686414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 2027470 - 2027510
Alignment:
Q  295 gcttataggttttgtgaaaatagtttgactttatttcatct 335  Q
    ||||||||||| | |||||||||||||||||||||| ||||    
T  2027470 gcttataggttatatgaaaatagtttgactttattttatct 2027510  T

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