View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6236_low_12 (Length: 325)

Name: NF6236_low_12
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6236_low_12
NF6236_low_12
[»] chr5 (10 HSPs)
chr5 (37-325)||(40845784-40846072)
chr5 (40-116)||(41144669-41144745)
chr5 (70-121)||(10523682-10523733)
chr5 (38-121)||(14547818-14547901)
chr5 (53-115)||(967573-967635)
chr5 (41-115)||(8222112-8222186)
chr5 (70-106)||(554386-554422)
chr5 (40-96)||(7738557-7738613)
chr5 (41-112)||(29557470-29557541)
chr5 (39-109)||(2352175-2352245)
[»] chr3 (17 HSPs)
chr3 (43-119)||(25102066-25102141)
chr3 (38-116)||(47850012-47850090)
chr3 (36-116)||(25134175-25134255)
chr3 (36-116)||(47006589-47006669)
chr3 (39-106)||(35306617-35306684)
chr3 (41-119)||(42891016-42891094)
chr3 (40-119)||(26040814-26040894)
chr3 (38-121)||(18029983-18030066)
chr3 (37-114)||(39430254-39430331)
chr3 (70-114)||(4539883-4539927)
chr3 (38-114)||(47069307-47069383)
chr3 (37-96)||(52859627-52859686)
chr3 (40-106)||(19961131-19961197)
chr3 (51-109)||(25096290-25096348)
chr3 (70-116)||(37919185-37919231)
chr3 (37-106)||(27117959-27118028)
chr3 (40-116)||(48192655-48192731)
[»] chr2 (13 HSPs)
chr2 (36-116)||(20061143-20061223)
chr2 (46-116)||(32294598-32294668)
chr2 (40-114)||(44068872-44068946)
chr2 (36-116)||(14275749-14275828)
chr2 (38-117)||(3348291-3348370)
chr2 (38-114)||(409893-409970)
chr2 (70-119)||(2290287-2290336)
chr2 (36-114)||(30549050-30549130)
chr2 (36-96)||(39420301-39420361)
chr2 (37-116)||(25626337-25626416)
chr2 (38-121)||(37230556-37230639)
chr2 (54-112)||(7061535-7061593)
chr2 (70-119)||(7743810-7743859)
[»] chr7 (5 HSPs)
chr7 (38-116)||(32786785-32786863)
chr7 (54-114)||(28337215-28337275)
chr7 (43-112)||(7458003-7458072)
chr7 (70-119)||(34964045-34964094)
chr7 (38-94)||(45837803-45837859)
[»] chr4 (14 HSPs)
chr4 (35-96)||(20537411-20537472)
chr4 (39-116)||(27918424-27918501)
chr4 (38-116)||(1961605-1961683)
chr4 (38-116)||(22019384-22019462)
chr4 (41-112)||(14138973-14139044)
chr4 (36-106)||(28675783-28675853)
chr4 (38-116)||(42051200-42051278)
chr4 (63-112)||(38705765-38705814)
chr4 (41-96)||(39259995-39260050)
chr4 (39-117)||(564198-564276)
chr4 (78-116)||(36937503-36937541)
chr4 (38-116)||(50297725-50297803)
chr4 (38-95)||(29508637-29508694)
chr4 (39-116)||(36989829-36989906)
[»] chr1 (9 HSPs)
chr1 (35-116)||(1035560-1035641)
chr1 (37-114)||(11018032-11018109)
chr1 (70-119)||(37316659-37316708)
chr1 (38-96)||(8644801-8644859)
chr1 (38-116)||(31262553-31262632)
chr1 (40-106)||(28490596-28490662)
chr1 (43-117)||(41884706-41884780)
chr1 (83-119)||(15281399-15281435)
chr1 (36-116)||(29033026-29033106)
[»] chr8 (16 HSPs)
chr8 (38-116)||(31313302-31313380)
chr8 (40-116)||(7811823-7811900)
chr8 (42-106)||(35865131-35865195)
chr8 (40-116)||(7774591-7774669)
chr8 (40-116)||(7791238-7791316)
chr8 (38-116)||(6530301-6530379)
chr8 (38-116)||(8867177-8867255)
chr8 (47-96)||(21372447-21372496)
chr8 (40-116)||(5493374-5493450)
chr8 (72-116)||(8769086-8769130)
chr8 (41-116)||(45244677-45244752)
chr8 (70-116)||(40505342-40505388)
chr8 (38-112)||(42685705-42685778)
chr8 (72-117)||(26014419-26014464)
chr8 (70-114)||(8114394-8114438)
chr8 (71-119)||(41720141-41720189)
[»] chr6 (6 HSPs)
chr6 (40-114)||(30249141-30249215)
chr6 (70-116)||(29285996-29286042)
chr6 (41-114)||(6469640-6469713)
chr6 (38-121)||(14215150-14215233)
chr6 (38-106)||(3787423-3787491)
chr6 (40-116)||(11659252-11659328)
[»] scaffold0482 (1 HSPs)
scaffold0482 (40-116)||(597-675)
[»] scaffold0116 (2 HSPs)
scaffold0116 (70-116)||(3050-3096)
scaffold0116 (70-106)||(6101-6137)
[»] scaffold0542 (1 HSPs)
scaffold0542 (37-116)||(4509-4588)
[»] scaffold0181 (1 HSPs)
scaffold0181 (83-119)||(10830-10866)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 37 - 325
Target Start/End: Original strand, 40845784 - 40846072
Alignment:
Q  37 tggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaattagagtacaagttaac 136  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  40845784 tggcaaatgttaatttgtgcccttaaggacatatgttaaggaactcattataaaaatatatgtatcaaaaatcgtgcatttaattagagtataagttaac 40845883  T
Q  137 atgaccctttgagtttttataattcaaggctaattaactgataagtgaattatacccactcaccagctaacgagctttgaattatatcatttattactaa 236  Q
    |||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  40845884 atgaccctttgagtttttataattcaaggctaattaactagtgagtgaattatacccactcaccaactaattagctttgaattatatcatttattactaa 40845983  T
Q  237 acttgtcccatatttatgtcacttactttcaaactaatcattacaagtcaataaaaccaagttggtcagcgtcattcaaaacccaattt 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40845984 acttgtcccatatttatgtcacttactttcaaactaatcattacaagtcaataaaaccaagttggtcagcttcattcaaaacccaattt 40846072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 41144745 - 41144669
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||||  ||||| ||| |||||||  |||||||||||||||||||||||||||  |||||||| |||||||||    
T  41144745 caaatgttatcttgtgtcctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcgtgcatt 41144669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 10523682 - 10523733
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaatt 121  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  10523682 tgttaaggaactcattatagaaatatacgtatcaaaagtcgtgcattcaatt 10523733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 14547818 - 14547901
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaatt 121  Q
    |||||||||||| || |||||| |||||||  |||||||||| || ||||||||||||| | ||||||| ||||||| ||||||    
T  14547818 ggcaaatgttaacttatgccctcaagggcacatgttaaggaattccttatagaaatatacgcatcaaaagtcgtgcagttaatt 14547901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 967573 - 967635
Alignment:
Q  53 gtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcat 115  Q
    ||||||| |||||||  |||||||||| ||||||||||||||||||||| |||| | ||||||    
T  967573 gtgccctcaagggcacatgttaaggaattcattatagaaatatatgtattaaaagtggtgcat 967635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 8222186 - 8222112
Alignment:
Q  41 aaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcat 115  Q
    ||||||||| |||||| ||||| | ||  |||||| |||||||||||||||||||| |||| ||||| |||||||    
T  8222186 aaatgttaacttgtgctcttaatgacacatgttaatgaactcattatagaaatatacgtattaaaaaccgtgcat 8222112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 554422 - 554386
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaa 106  Q
    |||||||||||||||||||||||||||||||| ||||    
T  554422 tgttaaggaactcattatagaaatatatgtattaaaa 554386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 7738613 - 7738557
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatata 96  Q
    |||||||||| ||||||| ||||| |||  ||||||| |||||||||||||||||||    
T  7738613 caaatgttaacttgtgcctttaagagcacatgttaagtaactcattatagaaatata 7738557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 29557470 - 29557541
Alignment:
Q  41 aaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtg 112  Q
    |||||||||||||| |||| ||| ||   |||||| ||| | |||||||||||||||||||||||| |||||    
T  29557470 aaatgttaatttgtaccctcaagcgcgcatgttaaagaatttattatagaaatatatgtatcaaaagtcgtg 29557541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 2352175 - 2352245
Alignment:
Q  39 gcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatc 109  Q
    ||||||| ||| |||||||||||||  ||| | ||||| ||||||||||| ||||| | ||||||||||||    
T  2352175 gcaaatggtaaattgtgcccttaagaacatatattaagaaactcattatataaataaacgtatcaaaaatc 2352245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 25102141 - 25102066
Alignment:
Q  43 atgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaa 119  Q
    ||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  25102141 atgttaacttgtgccctcaagggcatatgttaagga-ctcattatagaaatatatgtatcaaaaattgtgtatttaa 25102066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 47850090 - 47850012
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||||||||||||| ||| |||| ||  |||||||||||||||||||||||||||| |||||||| || ||||||    
T  47850090 ggcaaatgttaatttgtgtcctcaaggacacatgttaaggaactcattatagaaatatatctatcaaaattcatgcatt 47850012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 25134255 - 25134175
Alignment:
Q  36 atggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||| ||||||||| |||||| || || | ||  ||||||||||||||||||||||||||||||||||||| |||||||||    
T  25134255 atggtaaatgttaacttgtgctctcaaagacacatgttaaggaactcattatagaaatatatgtatcaaaagtcgtgcatt 25134175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 47006589 - 47006669
Alignment:
Q  36 atggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||  ||||||||||||  | ||||||| |||||||||    
T  47006589 atggcaaatgttaacttgtgccctcaagggcacatgttaaggaactttttatagaaatattcgcatcaaaagtcgtgcatt 47006669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 35306684 - 35306617
Alignment:
Q  39 gcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaa 106  Q
    ||||||||||| ||||||||| |||||||| ||||||  |||||||||||||||||||  ||||||||    
T  35306684 gcaaatgttaacttgtgccctcaagggcatatgttaacaaactcattatagaaatatacttatcaaaa 35306617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 42891016 - 42891094
Alignment:
Q  41 aaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaa 119  Q
    ||||| |||||||| |||| ||   ||| ||||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  42891016 aaatggtaatttgtaccctcaataacatatgttaagaaactcattatagaaatatatgtatcgaaaatcgtgcgtttaa 42891094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 26040814 - 26040894
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaa-tcgtgcatttaa 119  Q
    ||||||||||||||||| || || | ||   |||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  26040814 caaatgttaatttgtgctctcaatgacacacgttaaggaactcgttatagaaatatacgtatcaaaaagtcgtgcatttaa 26040894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 18029983 - 18030066
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaatt 121  Q
    |||||||||||| || |||||| |||||||  |||||||||||| | || |||||||||||||  |||| ||||||||| ||||    
T  18029983 ggcaaatgttaacttatgccctcaagggcacatgttaaggaacttaataaagaaatatatgtacgaaaagtcgtgcattcaatt 18030066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 39430254 - 39430331
Alignment:
Q  37 tggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgca 114  Q
    ||||||||| ||| || |||||| ||||||   | |||| |||||||||||||||| ||||||||||||| |||||||    
T  39430254 tggcaaatgctaacttatgccctcaagggcgcatcttaaagaactcattatagaaacatatgtatcaaaagtcgtgca 39430331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 4539883 - 4539927
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaaatcgtgca 114  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||||    
T  4539883 tgttaagaaactcattataaaaatatatgtattaaaaatcgtgca 4539927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 47069383 - 47069307
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgca 114  Q
    |||||||||||| ||| |||||||||||||  | |||||||| | ||||| ||||||||  |||||||| |||||||    
T  47069383 ggcaaatgttaacttgcgcccttaagggcacattttaaggaatttattatggaaatatacatatcaaaagtcgtgca 47069307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 52859686 - 52859627
Alignment:
Q  37 tggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatata 96  Q
    ||||||||||||||||||||||| || | ||| ||||||  |||||||| ||||||||||    
T  52859686 tggcaaatgttaatttgtgccctcaatgacatatgttaaataactcattgtagaaatata 52859627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 19961131 - 19961197
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaa 106  Q
    |||||| ||| ||||||||| ||||  |  |||||||||||| |||||||||||||| |||||||||    
T  19961131 caaatgataacttgtgccctgaaggatacatgttaaggaactaattatagaaatatacgtatcaaaa 19961197  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 25096290 - 25096348
Alignment:
Q  51 ttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatc 109  Q
    ||||||||| || ||||  ||||||||||||||||||||||||||| | || |||||||    
T  25096290 ttgtgccctcaaaggcacatgttaaggaactcattatagaaatatacgcataaaaaatc 25096348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 37919185 - 37919231
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |||||||    
T  37919185 tgttaagaaactcattatataaatatacgtatcaaaaattgtgcatt 37919231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 27118028 - 27117959
Alignment:
Q  37 tggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaa 106  Q
    ||||||||| |||  |||||||| |||||||  |||| ||||||||||| || |||||||||||| ||||    
T  27118028 tggcaaatgctaacgtgtgccctcaagggcacatgttgaggaactcattgtaaaaatatatgtattaaaa 27117959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 48192731 - 48192655
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    ||||||||||||||| || | |||| ||  ||||||| |||| ||||||||||||||  ||| |||||||| |||||    
T  48192731 caaatgttaatttgtaccttcaaggacacatgttaagaaacttattatagaaatatacttattaaaaatcgcgcatt 48192655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 20061223 - 20061143
Alignment:
Q  36 atggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||||||||| ||||||||| |||||||  || |||||||||||||||||||||||| ||||||||| | |||||||    
T  20061223 atggcaaatgttaacttgtgccctcaagggcacatgctaaggaactcattatagaaatatacgtatcaaaagttgtgcatt 20061143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 32294668 - 32294598
Alignment:
Q  46 ttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||| ||||||||| |||||||  |||||||||||||||||||||||||||||||| |||| |||||||||    
T  32294668 ttaacttgtgccctcaagggcacatgttaaggaactcattatagaaatatatgtattaaaagtcgtgcatt 32294598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 44068946 - 44068872
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgca 114  Q
    ||||||||||||||||| || || | ||  |||||||||| |||||||||||||||||||||||||| |||||||    
T  44068946 caaatgttaatttgtgctctcaaagacacatgttaaggaattcattatagaaatatatgtatcaaaagtcgtgca 44068872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 14275749 - 14275828
Alignment:
Q  36 atggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||||| ||| ||||||||  |||||||  | ||||||||||||||||||||||||| ||||||||| || ||||||    
T  14275749 atggcaaatgctaacttgtgcccc-aagggcacatattaaggaactcattatagaaatatacgtatcaaaagtcatgcatt 14275828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 3348291 - 3348370
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcattt 117  Q
    |||||||||||| ||  ||||| |||||||| ||||||| || || ||||||||||||||  ||||||| ||||||||||    
T  3348291 ggcaaatgttaacttaagccctcaagggcatatgttaagaaattccttatagaaatatattaatcaaaagtcgtgcattt 3348370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 409893 - 409970
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaa-gggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgca 114  Q
    |||||||||||| ||||||| | || |||||| ||||||||||||| ||||||||||| |  |||||||| |||||||    
T  409893 ggcaaatgttaacttgtgccttcaaagggcatatgttaaggaactcgttatagaaataaacttatcaaaagtcgtgca 409970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 2290287 - 2290336
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaa 119  Q
    |||||||| |||||||||| ||||||||||||| ||| ||||||||||||    
T  2290287 tgttaaggcactcattataaaaatatatgtatcgaaattcgtgcatttaa 2290336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 30549050 - 30549130
Alignment:
Q  36 atggcaaatgttaatttgtgcccttaagggc--atgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgca 114  Q
    |||||||||||||| |||||| |  ||||||  |  ||||||||||||| ||||||||||||| ||||||||| |||||||    
T  30549050 atggcaaatgttaacttgtgctcacaagggcgcacatgttaaggaactctttatagaaatatacgtatcaaaagtcgtgca 30549130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 39420361 - 39420301
Alignment:
Q  36 atggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatata 96  Q
    |||||||||| ||| |||| | || |||||||  |||||||||||||||||||||||||||    
T  39420361 atggcaaatgctaacttgttcgctcaagggcacatgttaaggaactcattatagaaatata 39420301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 25626416 - 25626337
Alignment:
Q  37 tggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    ||||||||| ||| ||||||||| ||   ||  |||||||||||| |||||||||||||| ||||||||| |||| ||||    
T  25626416 tggcaaatgctaacttgtgccctcaataacacatgttaaggaacttattatagaaatatacgtatcaaaagtcgtacatt 25626337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 37230556 - 37230639
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaatt 121  Q
    |||||||| ||| ||||||| | |||| ||  ||| |||||| |||||||| ||||||||||||||||| || |||||| ||||    
T  37230556 ggcaaatgctaacttgtgccttcaaggacacatgtaaaggaaatcattatataaatatatgtatcaaaagtcatgcattcaatt 37230639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 7061535 - 7061593
Alignment:
Q  54 tgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtg 112  Q
    |||||||||| |||  |||||| ||||| |||||||||||||||| ||||||| |||||    
T  7061535 tgcccttaagagcacatgttaaagaacttattatagaaatatatgcatcaaaagtcgtg 7061593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 7743859 - 7743810
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaa 119  Q
    |||||| |||||||||||||||||||||| ||| ||| ||||||| ||||    
T  7743859 tgttaaagaactcattatagaaatatatgcatcgaaagtcgtgcagttaa 7743810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 32786785 - 32786863
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||| ||| ||||||||| |||||||  ||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  32786785 ggcaaatgctaacttgtgccctcaagggcacatgttaaggaactcattatataaatatacgtatcaaaagtcgtgcatt 32786863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 28337215 - 28337275
Alignment:
Q  54 tgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgca 114  Q
    |||||| |||||||  ||||||| |||||||||||||||||||||||| ||||||||||||    
T  28337215 tgccctcaagggcacatgttaagaaactcattatagaaatatatgtataaaaaatcgtgca 28337275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 7458072 - 7458003
Alignment:
Q  43 atgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtg 112  Q
    ||||||||||||||| | || | ||  ||||||  || ||||||||||||||||||||||||||||||||    
T  7458072 atgttaatttgtgccataaatgacacatgttaataaattcattatagaaatatatgtatcaaaaatcgtg 7458003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 34964094 - 34964045
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaa 119  Q
    |||||| ||| ||||||||||||||||| |||||||| ||||||| ||||    
T  34964094 tgttaaagaattcattatagaaatatatttatcaaaagtcgtgcagttaa 34964045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 45837803 - 45837859
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaata 94  Q
    |||||||| ||||||||||||  |||||||  |||||||  ||||||||||||||||    
T  45837803 ggcaaatgctaatttgtgcccacaagggcacatgttaagatactcattatagaaata 45837859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 20537472 - 20537411
Alignment:
Q  35 aatggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatata 96  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||    
T  20537472 aatggaaaatgttaatttgtgccctcaagggcatatgttaaggaactcattataaaaatata 20537411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 27918501 - 27918424
Alignment:
Q  39 gcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    ||||||| ||| ||||||||| |||| ||  ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  27918501 gcaaatgctaacttgtgccctcaaggacacatgttaaggaactcgttatagaaatatatgtatcaaaagtcgtgcatt 27918424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 1961605 - 1961683
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||||||||||||||||| |||||||  ||||||  |||| ||||||||||||||  |||||||| |||||||||    
T  1961605 ggcaaatgttaatttgtgccctcaagggcacatgttaaaaaacttattatagaaatataaatatcaaaagtcgtgcatt 1961683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 22019384 - 22019462
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||| ||| ||||||||| |||| ||  |||||| |||||||||||||||||||||| || ||||||||| ||||    
T  22019384 ggcaaatgctaacttgtgccctcaaggacacatgttaaagaactcattatagaaatatatgcattaaaaatcgtacatt 22019462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 14138973 - 14139044
Alignment:
Q  41 aaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtg 112  Q
    ||||||||| ||||||| | |||||||  |||||| |||| | ||||||||||||| |||||||||||||||    
T  14138973 aaatgttaacttgtgccttcaagggcacatgttaatgaaccctttatagaaatatacgtatcaaaaatcgtg 14139044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 28675853 - 28675783
Alignment:
Q  36 atggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaa 106  Q
    |||||||||| ||| || || |||||||||||  |||||||||| ||||||||||||||||  ||||||||    
T  28675853 atggcaaatgctaacttatgtccttaagggcacatgttaaggaagtcattatagaaatatacatatcaaaa 28675783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 42051278 - 42051200
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||| ||| ||||||| | |||| ||  | |||| |||||||||||| ||||||||||||||||| |||||||||    
T  42051278 ggcaaatgctaacttgtgccatcaaggacacatattaatgaactcattataaaaatatatgtatcaaaagtcgtgcatt 42051200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 38705765 - 38705814
Alignment:
Q  63 gggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtg 112  Q
    ||||| || |||||||||| |||||||||||||||| |||||||||||||    
T  38705765 gggcacgtattaaggaacttattatagaaatatatgcatcaaaaatcgtg 38705814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 39259995 - 39260050
Alignment:
Q  41 aaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatata 96  Q
    ||||||||||||||||| ||||| |||  ||||||||||| ||||||| |||||||    
T  39259995 aaatgttaatttgtgcctttaagagcagatgttaaggaacccattataaaaatata 39260050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 564276 - 564198
Alignment:
Q  39 gcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcattt 117  Q
    ||||||||||| ||||| ||| ||||| |  |||||||||  | |||||||||||||| |||| |||||| ||||||||    
T  564276 gcaaatgttaacttgtgtcctcaagggtacatgttaaggagtttattatagaaatatacgtattaaaaattgtgcattt 564198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 36937541 - 36937503
Alignment:
Q  78 aactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  36937541 aactcattatagaaatatatgtataaaaaaacgtgcatt 36937503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 50297803 - 50297725
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||| ||| ||||||||| |||||||  |||||||  |||||||||||||||| |  ||||||||  ||||||||    
T  50297803 ggcaaatgctaacttgtgccctcaagggcacatgttaagatactcattatagaaatacacatatcaaaaggcgtgcatt 50297725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 29508637 - 29508694
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatat 95  Q
    |||||||||||| || |||||| |||||||  |||||||||||| |||||| ||||||    
T  29508637 ggcaaatgttaacttatgccctcaagggcacatgttaaggaactaattataaaaatat 29508694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 36989829 - 36989906
Alignment:
Q  39 gcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    ||||||||||| ||||| ||| |||||||  | ||||| ||||||||||| |||||||  ||| |||| |||||||||    
T  36989829 gcaaatgttaacttgtgtcctcaagggcacatattaagaaactcattataaaaatatacatattaaaagtcgtgcatt 36989906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 1035560 - 1035641
Alignment:
Q  35 aatggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||| |||||||||| ||||||||| |||||||  |||||||||||||||||||||||||||  |||||||| || ||||||    
T  1035560 aatgacaaatgttaacttgtgccctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcttgcatt 1035641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 11018109 - 11018032
Alignment:
Q  37 tggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgca 114  Q
    ||||||||||||| |||||| || |||||||  |||||||||||| |||||||||||||| |||| |||| |||||||    
T  11018109 tggcaaatgttaacttgtgctctcaagggcacatgttaaggaacttattatagaaatatacgtattaaaagtcgtgca 11018032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 37316708 - 37316659
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaa 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  37316708 tgttaaggaactcattataaaaatatatgtatcaaaaatcgtgtatttaa 37316659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 8644859 - 8644801
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatata 96  Q
    |||||||||||| ||||||||| |||||||  ||||||  |||||||||||||||||||    
T  8644859 ggcaaatgttaacttgtgccctcaagggcacatgttaataaactcattatagaaatata 8644801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 31262553 - 31262632
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatat-atgtatcaaaaatcgtgcatt 116  Q
    |||||||| ||| |||| |||| |||||||| | ||||| |||||||||||||||||| |  |||||||||| |||||||    
T  31262553 ggcaaatgctaacttgtaccctcaagggcatatattaagaaactcattatagaaatataacatatcaaaaattgtgcatt 31262632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 28490662 - 28490596
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaa 106  Q
    |||||| |||||||||| ||||| | ||  |||||||||| ||||||||||||||||  ||||||||    
T  28490662 caaatgctaatttgtgctcttaatgacacatgttaaggaattcattatagaaatatacatatcaaaa 28490596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 41884780 - 41884706
Alignment:
Q  43 atgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcattt 117  Q
    ||||||| ||||||||| || ||||  ||||||| ||||||||||||||| |||  |||||||| || |||||||    
T  41884780 atgttaacttgtgccctcaatggcacatgttaagtaactcattatagaaacatacatatcaaaagtcatgcattt 41884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 15281435 - 15281399
Alignment:
Q  83 attatagaaatatatgtatcaaaaatcgtgcatttaa 119  Q
    |||||||||||||||| || |||||||||||||||||    
T  15281435 attatagaaatatatgcattaaaaatcgtgcatttaa 15281399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 29033106 - 29033026
Alignment:
Q  36 atggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||| ||||| ||||||||||| | || | ||  |||||||||| ||| |||||||||||| ||||||||| | |||||||    
T  29033106 atggtaaatgctaatttgtgccttcaatgacacatgttaaggaaatcagtatagaaatatacgtatcaaaagttgtgcatt 29033026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 31313302 - 31313380
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||| ||| ||||||||| |||||||  |||||||||| |||||||||||||||| ||||||||| || ||||||    
T  31313302 ggcaaatgctaacttgtgccctcaagggcacatgttaaggaagtcattatagaaatatacgtatcaaaagtcatgcatt 31313380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 7811823 - 7811900
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgtt-aaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||||| ||||||||||||| | |  |||| ||  ||||||||||||||||||||||||||||| |||||||||    
T  7811823 caaatgttaacttgtgcccttaagagtacatgttaaaaaaactcattatagaaatatatgtatcaaaagtcgtgcatt 7811900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 35865131 - 35865195
Alignment:
Q  42 aatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaa 106  Q
    |||||||| |||| |||| |||||||| |||||||||||| ||||||||||||||  ||||||||    
T  35865131 aatgttaagttgttccctcaagggcatatgttaaggaacttattatagaaatatacatatcaaaa 35865195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 7774591 - 7774669
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaa--ctcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||||| ||||||||||||| | |  ||||||  ||  ||||||||||||||||||||||||||| |||||||||    
T  7774591 caaatgttaacttgtgcccttaagagtacatgttaaaaaaaactcattatagaaatatatgtatcaaaagtcgtgcatt 7774669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 7791238 - 7791316
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaa--ctcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||||| ||||||||||||| | |  ||||||  ||  ||||||||||||||||||||||||||| |||||||||    
T  7791238 caaatgttaacttgtgcccttaagagtacatgttaaaaaaaactcattatagaaatatatgtatcaaaagtcgtgcatt 7791316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 6530301 - 6530379
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||| ||| ||||||||| |||||||  |||||||||||| |||| ||||||||| | || |||| |||||||||    
T  6530301 ggcaaatgctaacttgtgccctcaagggcacatgttaaggaacttattaaagaaatataagcataaaaagtcgtgcatt 6530379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 8867177 - 8867255
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||| ||||||| ||||||| | |||||||  |||||| |||||||||||||||||||| | ||||||| | |||||||    
T  8867177 ggcacatgttaacttgtgccttgaagggcacatgttaaagaactcattatagaaatatacgcatcaaaagttgtgcatt 8867255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 21372447 - 21372496
Alignment:
Q  47 taatttgtgcccttaagggcatgtgttaaggaactcattatagaaatata 96  Q
    ||||||||||||| ||||| || |||||||||||| ||||||||||||||    
T  21372447 taatttgtgccctcaagggaatatgttaaggaacttattatagaaatata 21372496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 5493450 - 5493374
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||| ||| ||||||||| |||||||  ||||||| || |||||||||||||| | | ||||||| |||||||||    
T  5493450 caaatgctaacttgtgccctcaagggcacatgttaagaaagtcattatagaaatacacgcatcaaaagtcgtgcatt 5493374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 8769130 - 8769086
Alignment:
Q  72 ttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||||||||||||||||||||||||| |||| | |||||||    
T  8769130 ttaaggaactcattatagaaatatatgtataaaaagttgtgcatt 8769086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 45244677 - 45244752
Alignment:
Q  41 aaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    ||||||||| ||||| || ||| | ||  |||||| |||||||||||||||||||| |||| |||| |||||||||    
T  45244677 aaatgttaacttgtgtccctaaagacacatgttaatgaactcattatagaaatatacgtattaaaagtcgtgcatt 45244752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 40505388 - 40505342
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    ||||||||||||||||||  |||||||| |||||||| |||||||||    
T  40505388 tgttaaggaactcattatgaaaatatatatatcaaaagtcgtgcatt 40505342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 42685705 - 42685778
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtg 112  Q
    |||||||| |||||||||||||| | ||||  ||| |||||| | ||||||||||||| |||||||||| |||||    
T  42685705 ggcaaatgctaatttgtgcccttgaaggcacatgt-aaggaatttattatagaaatatgtgtatcaaaagtcgtg 42685778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 26014419 - 26014464
Alignment:
Q  72 ttaaggaactcattatagaaatatatgtatcaaaaatcgtgcattt 117  Q
    ||||| ||||||||||  ||||||||||||||||| ||||||||||    
T  26014419 ttaagaaactcattattaaaatatatgtatcaaaagtcgtgcattt 26014464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 8114438 - 8114394
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaaatcgtgca 114  Q
    ||||||| ||||||||||| |||||||||||| |||| |||||||    
T  8114438 tgttaagaaactcattataaaaatatatgtattaaaagtcgtgca 8114394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 41720141 - 41720189
Alignment:
Q  71 gttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaa 119  Q
    |||||||||||| ||||| ||||||||| || |||| ||||||||||||    
T  41720141 gttaaggaactctttatataaatatatggattaaaagtcgtgcatttaa 41720189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 30249141 - 30249215
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgca 114  Q
    |||||| ||| |||||||||||| | ||  ||||||||||||||||||||||||||| ||||||||| |||||||    
T  30249141 caaatgctaacttgtgcccttaatgacacatgttaaggaactcattatagaaatataggtatcaaaattcgtgca 30249215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 29285996 - 29286042
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||    
T  29285996 tgttaatgaactcattatagaaatatacgtataaaaaatcgtgcatt 29286042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 6469713 - 6469640
Alignment:
Q  41 aaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgca 114  Q
    ||||| ||| |||| |||| || ||||| |||||||||| ||||||||||||||||| ||| |||| |||||||    
T  6469713 aaatgctaacttgtaccctcaatggcatatgttaaggaattcattatagaaatatatttattaaaagtcgtgca 6469640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 14215233 - 14215150
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatttaatt 121  Q
    |||||||||||| ||||| | | |||||||  | |||| ||||| ||||||  |||||||||||||||||||||| ||| ||||    
T  14215233 ggcaaatgttaacttgtgtcttgaagggcacatcttaatgaacttattataagaatatatgtatcaaaaatcgtgtattcaatt 14215150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 3787423 - 3787491
Alignment:
Q  38 ggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaa 106  Q
    |||||||| ||||||||||||| |||| ||  |||||| ||||| |||||| ||||||| |||| ||||    
T  3787423 ggcaaatgctaatttgtgccctcaaggacacatgttaaagaacttattataaaaatatacgtattaaaa 3787491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 11659252 - 11659328
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||| ||| || |||||| ||||| |  ||||||||||   ||||||||||||||||||| ||||||| ||||||    
T  11659252 caaatgctaacttatgccctcaagggaacatgttaaggaatatattatagaaatatatgtataaaaaatcatgcatt 11659328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 675 - 597
Alignment:
Q  40 caaatgttaatttgtgcccttaagggcatgtgttaaggaa--ctcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    |||||||||| ||||||||||||| | |  ||||||  ||  ||||||||||||||||||||||||||| |||||||||    
T  675 caaatgttaacttgtgcccttaagagtacatgttaaaaaaaactcattatagaaatatatgtatcaaaagtcgtgcatt 597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 3096 - 3050
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    ||||||||||||||||||||| ||||||||||||||| || ||||||    
T  3096 tgttaaggaactcattatagatatatatgtatcaaaagtcatgcatt 3050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 6137 - 6101
Alignment:
Q  70 tgttaaggaactcattatagaaatatatgtatcaaaa 106  Q
    ||||||||||||||||||||| |||||||||||||||    
T  6137 tgttaaggaactcattatagatatatatgtatcaaaa 6101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 4509 - 4588
Alignment:
Q  37 tggcaaatgttaatttgtgcccttaagggcatgtgttaaggaactcattatagaaatatatgtatcaaaaatcgtgcatt 116  Q
    ||||||||| ||| ||||||||| |||| ||  |||||||  ||||||||||||||||||  ||||||||  ||||||||    
T  4509 tggcaaatgctaacttgtgccctcaaggacacatgttaagatactcattatagaaatatacatatcaaaatgcgtgcatt 4588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 10866 - 10830
Alignment:
Q  83 attatagaaatatatgtatcaaaaatcgtgcatttaa 119  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  10866 attatagaaatatatgtatcaaaagtcgtgtatttaa 10830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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