View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6236_low_13 (Length: 311)
Name: NF6236_low_13
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6236_low_13 |
 | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 44613003 - 44613280
Alignment:
| Q |
24 |
acaactcgttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctgaattctagatttcctaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44613003 |
acaactcgttgactatgaaggttagtaatgattgggttcccccttttcaattattaacattgggcttatcatcttgtaatatgaattctagatttcctaa |
44613102 |
T |
|
| Q |
124 |
ttggcttcaaacacaaaatcacttatcctctcttttcctttcaaatgtcagtaatatatctccaatacctatttggttttgggataaattgcaaacacta |
223 |
Q |
| |
|
||||||||||||||||||| | |||||| | ||| |||||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||||||| |
|
|
| T |
44613103 |
ttggcttcaaacacaaaatgaattatccattatttccctttcaaatgtgagtaatatatctccaacacctctttggttttggggtaaattgcaaacacta |
44613202 |
T |
|
| Q |
224 |
ggtttcatgaccatttcaaacaacaatctcactggcatgattcctaatttggaactcaatcttaccaaccatcctatg |
301 |
Q |
| |
|
| | |||| | ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
44613203 |
gttggcatgtcaatttcaaacaacaatatcacaggcatgattcctaatttggaactcaatcttaccaacaatactatg |
44613280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 44795129 - 44795012
Alignment:
| Q |
173 |
agtaatatatctccaatacctatttggttttgggataaattgcaaacactaggtttcatgaccatttcaaacaacaatctcactggcatgattcctaatt |
272 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |||| | |||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
44795129 |
agtaatatatctccaatacctctttggttttggggtaaattgcaaacactagttggcatgtcaatttcaaa-aacaatatcacaggcatgattcctaatt |
44795031 |
T |
|
| Q |
273 |
tggaactcaatcttaccaa |
291 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
44795030 |
tggaactcaatcttaccaa |
44795012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 35899658 - 35899789
Alignment:
| Q |
93 |
catcttgtaatctgaattctagatttcctaattggcttcaaacacaaaatcacttatcctctcttttcctttcaaatgtcagtaatatatctccaatacc |
192 |
Q |
| |
|
||||||| ||||| |||| |||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
35899658 |
catcttgcaatctaaattatagatttcctaactggcttcaaacacaaaactccttatcctatcttatcctttcaaatgtcagtaatctagatccaatacc |
35899757 |
T |
|
| Q |
193 |
tatttggttttgggataaattgcaaacactag |
224 |
Q |
| |
|
|| ||||||||||| |||||| ||||||||| |
|
|
| T |
35899758 |
tacttggttttgggggaaattgaaaacactag |
35899789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 24 - 286
Target Start/End: Complemental strand, 28982 - 28720
Alignment:
| Q |
24 |
acaactcgttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctgaattctagatttcctaa |
123 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||| |||||||||||| | ||||| |||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
28982 |
acaactcattgactatggaggttagtaatgattgggttcctccttttcaattactagaattgggtttatcaaattgtaatatgaattctatatttcctaa |
28883 |
T |
|
| Q |
124 |
ttggcttcaaacacaaaatcacttatcctctcttttcctttcaaatgtcagtaatatatctccaatacctatttggttttgggataaattgcaaacacta |
223 |
Q |
| |
|
|||||| |||||||||||| | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
28882 |
ttggctccaaacacaaaatgaattatccactctttccctttcaaatgtcagtaatatatctccaatacctatttggttttggggaaaattgcaaacaata |
28783 |
T |
|
| Q |
224 |
ggtttcatgaccatttcaaacaacaatctcactggcatgattcctaatttggaactcaatctt |
286 |
Q |
| |
|
| | || |||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
28782 |
actagcttggacatttcaaacaacaatcttactggcatgattcctaatttagaactcaatctt |
28720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 24 - 286
Target Start/End: Original strand, 169810 - 170072
Alignment:
| Q |
24 |
acaactcgttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctgaattctagatttcctaa |
123 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||| |||||||||||| | ||||| |||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
169810 |
acaactcattgactatggaggttagtaatgattgggttcctccttttcaattactagaattgggtttatcaaattgtaatatgaattctatatttcctaa |
169909 |
T |
|
| Q |
124 |
ttggcttcaaacacaaaatcacttatcctctcttttcctttcaaatgtcagtaatatatctccaatacctatttggttttgggataaattgcaaacacta |
223 |
Q |
| |
|
|||||| |||||||||||| | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
169910 |
ttggctccaaacacaaaatgaattatccactctttccctttcaaatgtcagtaatatatctccaatacctatttggttttggggaaaattgcaaacaata |
170009 |
T |
|
| Q |
224 |
ggtttcatgaccatttcaaacaacaatctcactggcatgattcctaatttggaactcaatctt |
286 |
Q |
| |
|
| | || |||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
170010 |
actagcttggacatttcaaacaacaatcttactggcatgattcctaatttagaactcaatctt |
170072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 93 - 292
Target Start/End: Original strand, 180969 - 181168
Alignment:
| Q |
93 |
catcttgtaatctgaattctagatttcctaattggcttcaaacacaaaatcacttatcctctcttttcctttcaaatgtcagtaatatatctccaatacc |
192 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| || ||||| ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
180969 |
catcttgtaatctgaattctagatttcctgattggtttaaaacacaaaatcacttacactatctttacctttcagatgtcagtaatctatctccaatacc |
181068 |
T |
|
| Q |
193 |
tatttggttttgggataaattgcaaacactaggtttcatgaccatttcaaacaacaatctcactggcatgattcctaatttggaactcaatcttaccaac |
292 |
Q |
| |
|
| ||||||||||| ||||||||||||||| || |||| |||||||||||||||||| || ||||||| |||||||||||||||||| || |||||| |
|
|
| T |
181069 |
tcactggttttgggaaaaattgcaaacactatgtgacatggacatttcaaacaacaatctgaccggcatgaatcctaatttggaactcaaactcaccaac |
181168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 285
Target Start/End: Original strand, 26728620 - 26728810
Alignment:
| Q |
95 |
tcttgtaatctgaattctagatttcctaattggcttcaaacacaaaatcacttatcctctcttttcctttcaaatgtcagtaatatatctccaataccta |
194 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||| ||||| | | | ||||||| |
|
|
| T |
26728620 |
tcttgcaacctgaattctagatttcctaattggctccaaacacaaaacgacttatctgagctttccctttcaaatgtaggtaatttggcgcaaatacctc |
26728719 |
T |
|
| Q |
195 |
tttggttttgggataaattgcaaacactaggtttcatgaccatttcaaacaacaatctcactggcatgattcctaatttggaactcaatct |
285 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||| |||||||||||||||||||| ||| | |||||| || ||||||||||||| |
|
|
| T |
26728720 |
aatggttttggggaaaattgcaaacactagaactattgaacatttcaaacaacaatctcagtggtaggattccagatatggaactcaatct |
26728810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 29507286 - 29507168
Alignment:
| Q |
31 |
gttgactatgaaggttagtaatgattgggttccaccttttcaattatcaacattggccttatcatcttgtaatctgaattctagatttcctaattggctt |
130 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| |||||||||||| | ||| || ||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
29507286 |
gttgactgtgaaggttagtactgattgggttccgccttttcaattaaaatatttgttactagcatcttgtaatctcaactctacctttcctaattggctt |
29507187 |
T |
|
| Q |
131 |
caaacacaaaatcacttat |
149 |
Q |
| |
|
| | ||||||||||||| |
|
|
| T |
29507186 |
cttaatcaaaatcacttat |
29507168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University