View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6236_low_15 (Length: 306)
Name: NF6236_low_15
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6236_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 160 - 297
Target Start/End: Original strand, 10520506 - 10520643
Alignment:
| Q |
160 |
accaccaattccttcattaagcctcacactatccggaagctcgctataagccttcaacaatctggcctcatccggcatatacttcaagatcacatcagcc |
259 |
Q |
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| T |
10520506 |
accaccaattccttcattaagcctcacactatccggaagctcgctatacgccttcaacaatctggcctcatccggcatatacttcaagatcacatcagcc |
10520605 |
T |
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| Q |
260 |
ttatcatcctgataatcacgcaacccaacaagaataat |
297 |
Q |
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| T |
10520606 |
ttatcatcctgataatcacgcaacccaacaagaataat |
10520643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 10520356 - 10520436
Alignment:
| Q |
10 |
acatcatcatcatgatcataccataaaacttatnnnnnnnncccatcttttgaacnnnnnnncacgaacccctcaaatctt |
90 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
10520356 |
acatcatcatcatgatcataccataaaacttataaaaaaaacccatcttttgaacaaaaaaacacgaacccctcaaatctt |
10520436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 241720 - 241601
Alignment:
| Q |
160 |
accaccaattccttcattaagcctcacactatccggaagctcgctataagccttcaacaatctggcctcatccggcatatacttcaagatcacatcagcc |
259 |
Q |
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|||| |||| |||||||||||||| | | ||||||| ||| |||||||||||| | || ||||||||||||||||| ||||| |||||||||||| |
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| T |
241720 |
accagcaataccttcattaagcctaatagattccggaatctcatcataagccttcaatagcctcgcctcatccggcatatatttcaatatcacatcagcc |
241621 |
T |
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| Q |
260 |
ttatcatcctgataatcacg |
279 |
Q |
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|||||||||||||||||||| |
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| T |
241620 |
ttatcatcctgataatcacg |
241601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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