View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6236_low_2 (Length: 497)
Name: NF6236_low_2
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6236_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 189 - 488
Target Start/End: Complemental strand, 48416244 - 48415946
Alignment:
| Q |
189 |
aatgtaaattcttgtacttaaacaagtacggcaagttatnnnnnnntactactagtctattggcaaatgtacaagtagaacatgaagtccaacccaaccc |
288 |
Q |
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| T |
48416244 |
aatgtaaattcttgtacttaaacaagtacggcaagttataaaaaa-tactactagtctattggcaaatgtacaagtagaacatgaagtccaacccaaccc |
48416146 |
T |
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| Q |
289 |
ttttagtccacttggttctttcagtcttccaaaaacgcaaatgtactatttagtatttcccattctttcttgtatcatctagttttgagtttagactatt |
388 |
Q |
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| T |
48416145 |
ttttagtccacttggttctttcagtcttccaaaaacgcaaatgtactatttagtatttcccattctttcttgtatcatctagttttgagtttagactatt |
48416046 |
T |
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| Q |
389 |
tcagcaccagagcattgaatcttaagtgtgctgatgcagccttacaatgaaatggccaataacatcctttatcatgaacagaaactcacccttgatgatg |
488 |
Q |
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| T |
48416045 |
tcagcaccagagcattgaatcttaagtgtgctgatgcagccttacaatgaaatggccaataacatcctttatcatgaacagaaactcacccttgatgatg |
48415946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 48416450 - 48416294
Alignment:
| Q |
1 |
ttttttaaataatattcttcgagtgtcttgcaaatgataggaaatagattgtcgtgtcaacatagttaagatgattaattttttgtaatatttttgca-- |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48416450 |
ttttttaaataatattcttcgagtgtcttgcaaatgataggaaatagattgtcgtatcaacatagttaagatgattaattttttgtaatatttttgcatg |
48416351 |
T |
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| Q |
99 |
---ccaactcagaaaataaatcagatttttgtattaaggtaaacttaggtgaagtct |
152 |
Q |
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| T |
48416350 |
catccaactaagaaaataaatcaaatttttgtattaaggtaaacttaggtgaagtct |
48416294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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