View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6236_low_24 (Length: 220)
Name: NF6236_low_24
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6236_low_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 43601065 - 43600852
Alignment:
| Q |
7 |
cttcctaccttgaaactcgtatgtgttgtaattgttctgaattagtatttctatctcatcgttaacttcaagatcagactctatcttcccatacagtttt |
106 |
Q |
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| T |
43601065 |
cttcctaccttgaaactcgtatgtgttgtaattgttctgaattagtatttctatctcatcgttaacttcaagatcggactctatcttcccatacagtttt |
43600966 |
T |
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| Q |
107 |
ctgaaagttggtaatgctgctgttctcatccaaacaatcagatcctcttgttcactcaactgatgcatgccacaatacatagattacttatttcgcaagt |
206 |
Q |
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| T |
43600965 |
ctgaacgttggtaatgctgctgttctcatccaaacaatcagatcctcttgttcactcaactgatgcatgccacaatacatagattacttatttcgcaagt |
43600866 |
T |
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| Q |
207 |
aaaagattatattt |
220 |
Q |
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|||||||||||||| |
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| T |
43600865 |
aaaagattatattt |
43600852 |
T |
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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 33401345 - 33401424
Alignment:
| Q |
89 |
atcttcccatacagttttctgaaagttggtaatgctgctgttctcatccaaacaatcagatcctcttgttcactcaactg |
168 |
Q |
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|||||||| || | ||||||||| || || | |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33401345 |
atcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcactcaactg |
33401424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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