View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6236_low_5 (Length: 377)
Name: NF6236_low_5
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6236_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 105 - 334
Target Start/End: Complemental strand, 28742548 - 28742319
Alignment:
| Q |
105 |
ccattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggt |
204 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |
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| T |
28742548 |
ccattactatcctgcttgtcctgaaccacatttaacgatgggaaccgccaaacattctgatagtagtttcctcacagtgcttcttcaagaccatattggt |
28742449 |
T |
|
| Q |
205 |
ggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgatgttctgcaggcaagttctctct |
304 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| | |
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| T |
28742448 |
ggccttcaagttcttcacaagggaaagtggattgatgtaccaccaatacctgaggctcttgttattaatattggtgatgttctgcaggcaagttctctat |
28742349 |
T |
|
| Q |
305 |
tactatattgctatgtgtatttcctgcaac |
334 |
Q |
| |
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|||||| |||| |||| ||||||||||||| |
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| T |
28742348 |
tactattttgcaatgtctatttcctgcaac |
28742319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 106 - 302
Target Start/End: Complemental strand, 28735465 - 28735269
Alignment:
| Q |
106 |
cattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggtg |
205 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| ||||||| ||| | |||||| ||||||||| |||||| |
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| T |
28735465 |
cattactatcctgcttgtcctgaaccagatttaacaatgggaaccaccaaacattctgatggtagttttctcacagtgcttctccaagaccatattggtg |
28735366 |
T |
|
| Q |
206 |
gccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgatgttctgcaggcaagttctct |
302 |
Q |
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| T |
28735365 |
gtcttcaagttctttaccaagaaaagtggatcgatgtaccaccggtacccgaggctcttgttgttaatattggtgatcttctgcaggcaagttctct |
28735269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 106 - 302
Target Start/End: Complemental strand, 28700464 - 28700265
Alignment:
| Q |
106 |
cattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagacc--att-ttg |
202 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| |||||| ||| | |||||| ||||||| ||| ||| |
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| T |
28700464 |
cattactatcctgcttgtcctgaaccagatttaacaatgggaaccaccaaacattctgatgttagttttctcacagtgcttctccaagaccgtattattg |
28700365 |
T |
|
| Q |
203 |
gtggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgatgttctgcaggcaagttctct |
302 |
Q |
| |
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|||||||||||||||||||| | || |||||||| ||||||||||| |||| |||||||| ||||||||| |||||| ||||||||||||||||||| |
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| T |
28700364 |
gtggccttcaagttcttcaccaagacaagtggatcgatgtaccaccggtacccggggctcttgttgttaatatcggtgatcttctgcaggcaagttctct |
28700265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 28738915 - 28738822
Alignment:
| Q |
18 |
actatctaccgattatttcatcatttgtcacatcactaatgcatttgtaaccattggaattctcttttcccttgctcactacaaacaccattac |
111 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28738915 |
actatctaccgattatttcatcatttgtcacattactaatgcatttgtaaccattggaattctcttttcccttgctcactgcaaacaccattac |
28738822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 106 - 300
Target Start/End: Complemental strand, 28783534 - 28783337
Alignment:
| Q |
106 |
cattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagac---cattttg |
202 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| ||||||||| | ||||||||||||||| |||| ||| | |||||||||||| ||| ||| |
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| T |
28783534 |
cattactatcctgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaagatgatcatattg |
28783435 |
T |
|
| Q |
203 |
gtggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgatgttctgcaggcaagttct |
300 |
Q |
| |
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||||||| |||||| ||||| || | |||||||||||| |||| ||||||||| | ||||||| ||||||| |||||||| |||| |||||||||||| |
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| T |
28783434 |
gtggcctccaagtttttcaccagaacaagtggattgatatacctccaatacctgatgctcttgttgttaatgttggtgatcttctacaggcaagttct |
28783337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 28718600 - 28718511
Alignment:
| Q |
22 |
tctaccgattatttcatcatttgtcacatcactaatgcatttgtaaccattggaattctcttttcccttgctcactacaaacaccattac |
111 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||| |
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| T |
28718600 |
tctaccgattatttcatcattggtcacatcactgatgcatttgtagccattagaattctcttttcaattgctcactgcaaacaccattac |
28718511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 294
Target Start/End: Complemental strand, 16414607 - 16414496
Alignment:
| Q |
183 |
gcttcttcaagaccattttggtggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgat |
282 |
Q |
| |
|
|||||| ||||| ||| | |||||||||||| |||||||| ||| | ||||||||||||||| || || ||| ||||||| ||||||||||| ||| |
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| T |
16414607 |
gcttctacaagatcatgtaggtggccttcaatatcttcacagggacatgtggattgatgtacctcctatgcctgaggctctaatcgttaatattggcgat |
16414508 |
T |
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| Q |
283 |
gttctgcaggca |
294 |
Q |
| |
|
||||||||||| |
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| T |
16414507 |
tttctgcaggca |
16414496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 16439266 - 16439346
Alignment:
| Q |
202 |
ggtggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgat |
282 |
Q |
| |
|
||||| || ||||||||||| || || | ||||||||||||||| || ||| | ||||||||| ||||||||| |||||| |
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|
| T |
16439266 |
ggtggtctccaagttcttcataaagatatgtggattgatgtacctcctctacatgaggctcttgttgttaatatcggtgat |
16439346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 10768505 - 10768639
Alignment:
| Q |
106 |
cattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggtg |
205 |
Q |
| |
|
||||| |||||| |||||||||||| ||| || || ||||||| |||| |||||||||| | ||||||| | |||||| ||||||||| |||||| |
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| T |
10768505 |
cattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgataatgatttcctcactgtgcttctccaagaccatattggtg |
10768604 |
T |
|
| Q |
206 |
gccttcaagttcttcacaaggaaaagtggattgat |
240 |
Q |
| |
|
|||| ||||||||| | |||| || ||||||||| |
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|
| T |
10768605 |
gcctccaagttctttatcaggataaatggattgat |
10768639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 2050771 - 2050885
Alignment:
| Q |
105 |
ccattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggt |
204 |
Q |
| |
|
|||||| |||||| |||||||||||| ||| || || | ||||| | || |||||||||| | ||||||| | |||||||||||||||| ||||| |
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| T |
2050771 |
ccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttcttcaagaccatattggt |
2050870 |
T |
|
| Q |
205 |
ggccttcaagttctt |
219 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
2050871 |
ggcctccaagttctt |
2050885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 2055180 - 2055294
Alignment:
| Q |
105 |
ccattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggt |
204 |
Q |
| |
|
||||||||| ||| |||||||||||| ||| || || | ||||| | || |||||||||| | ||||||| | |||||||||||||||| ||||| |
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|
| T |
2055180 |
ccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttcttcaagaccatattggt |
2055279 |
T |
|
| Q |
205 |
ggccttcaagttctt |
219 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
2055280 |
ggcctccaagttctt |
2055294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 36467676 - 36467601
Alignment:
| Q |
35 |
tcatcatttgtcacatcactaatgcatttgtaaccattggaattctcttttcccttgctcactacaaacaccattac |
111 |
Q |
| |
|
||||||| |||||||||| | |||||||||||||||| | |||| |||||||||||||| | ||||||||||||| |
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|
| T |
36467676 |
tcatcatctgtcacatcattgatgcatttgtaaccatcaaagttct-ttttcccttgctcattgcaaacaccattac |
36467601 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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