View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6236_low_7 (Length: 368)
Name: NF6236_low_7
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6236_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 41078063 - 41078410
Alignment:
| Q |
8 |
ttatgtgtattttcttagagattcattaagctaggactttatcctattagtttatgcttagaaaagtttgattgtaatattgatttttgtataggatttg |
107 |
Q |
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| T |
41078063 |
ttatgtgtattttcttagagattcattaagctaggactttatcctattagttt-tgcttagaaaagtttgattgtaatattgatttttgtataggatttg |
41078161 |
T |
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| Q |
108 |
atgtacgacattggttactttgaacatcacatgatatattattattatttgttccaaagatttaattttctgttctcaaaaaatatatttaaagtattat |
207 |
Q |
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| T |
41078162 |
atgtacgacattggttactttgaacatcatttgatatattattattatttgttccaaagatttaattttctgttctcaaaaaatatatttaaagtattat |
41078261 |
T |
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| Q |
208 |
ttcctttaatcacgaagnnnnnnnttgttatttggtcagatcataaagataaaattgtaaattagttttaaaatacctctcttttcatattttgaaccaa |
307 |
Q |
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| T |
41078262 |
ttcctttaatcacgcagaaaaaaattgttatttgatcagatcataaagataaaattgtaaattagttttaaaatatctctcttttcatattttgaaccaa |
41078361 |
T |
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| Q |
308 |
acacatttgtaattaaacttttttcattccacttccctctcctcccctat |
357 |
Q |
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| T |
41078362 |
acacattt-taattaaacttttttcattccacttccctctcctcccctat |
41078410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 50190593 - 50190529
Alignment:
| Q |
155 |
tttgttccaaagatttaattttctgttctcaaaaaatatatttaaagtattatttcctttaatca |
219 |
Q |
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| T |
50190593 |
tttgttctaaagatttaatttgttgctccccaaaaatatttttaacgtattattttctttaatca |
50190529 |
T |
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