View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6236_low_9 (Length: 346)
Name: NF6236_low_9
Description: NF6236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6236_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 19291294 - 19290979
Alignment:
| Q |
18 |
tatgctatgtaaactagtaaaagacaagtaatgttgtcaaatgtttaaggataataaataaaaaaattcagttcgttttnnnnnnnnncaaa---ctaaa |
114 |
Q |
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| T |
19291294 |
tatgctatgtaaactaataaaagacaagtaatattgtcaaatgtttaaggataataaattaaaaaattcagtttgttttttttaaaaaaaaaaaactaaa |
19291195 |
T |
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| Q |
115 |
atgtaatatattaaactaaaccaacaagctcttccagcacgagatgtatcgacaattttaacattgtgacatgatacaattttgaaaactcatgactat- |
213 |
Q |
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| T |
19291194 |
atgtaatatattaaactaaaccaacaagttcttcca---cgagatgtatcgacaat-----------gacatgatacaattttgaaaactcatgactata |
19291109 |
T |
|
| Q |
214 |
---gtttaaaatatatat-----tctcttttcaacaagccataatggaatatattaaattaccataagtggttcgtc--gcacaaggcgtacaaaagaga |
303 |
Q |
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| T |
19291108 |
tatgtttaaaatatatatatatattttttttcaacaagccataatataatatattaaattaccataagtggttcatctcgcacaaggcgtacaaaagaga |
19291009 |
T |
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| Q |
304 |
atcactcaaacatattacatagttatgtct |
333 |
Q |
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| T |
19291008 |
atcactcaaacatattacatagttatgtct |
19290979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 19291336 - 19291294
Alignment:
| Q |
7 |
ttttttctttctatgctatgtaaactagtaaaagacaagtaat |
49 |
Q |
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| T |
19291336 |
ttttttctttctatgctatgtaaactagtaaaagacaagtaat |
19291294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 24450671 - 24450632
Alignment:
| Q |
185 |
atgatacaattttgaaaactcatgactatgtttaaaatat |
224 |
Q |
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| T |
24450671 |
atgataaaattttgaaaactcatgactatttttaaaatat |
24450632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 7807290 - 7807387
Alignment:
| Q |
233 |
ttttcaacaagccataatggaatatattaaattaccataagtggttc--gtcgcacaaggcgtacaaaagagaatcactcaaacatattacatagtta |
328 |
Q |
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| T |
7807290 |
ttttcaagaagtcataatggaatatattaaatcactataagcggttcatctcgcacaagacgcgcaaaagagaaccacccaaacacattacaaagtta |
7807387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 37996669 - 37996701
Alignment:
| Q |
192 |
aattttgaaaactcatgactatgtttaaaatat |
224 |
Q |
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| T |
37996669 |
aattttgaaaactcatgactatttttaaaatat |
37996701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 32096207 - 32096164
Alignment:
| Q |
180 |
gtgacatgatacaattttgaaaactcatgactatgtttaaaata |
223 |
Q |
| |
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|||| |||||| |||||||||||||||||||||| ||||||||| |
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| T |
32096207 |
gtgatatgataaaattttgaaaactcatgactatttttaaaata |
32096164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 21666130 - 21666090
Alignment:
| Q |
185 |
atgatacaattttgaaaactcatgactatgtttaaaatata |
225 |
Q |
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|||||| |||||||||||||||||||||| || |||||||| |
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| T |
21666130 |
atgataaaattttgaaaactcatgactattttcaaaatata |
21666090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 26649938 - 26649966
Alignment:
| Q |
285 |
acaaggcgtacaaaagagaatcactcaaa |
313 |
Q |
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| T |
26649938 |
acaaggcgtacaaaagagaatcactcaaa |
26649966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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