View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6237_high_4 (Length: 478)

Name: NF6237_high_4
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6237_high_4
NF6237_high_4
[»] chr4 (8 HSPs)
chr4 (19-270)||(30864568-30864816)
chr4 (399-478)||(985287-985366)
chr4 (401-450)||(9947936-9947985)
chr4 (413-450)||(56487282-56487319)
chr4 (404-436)||(3579134-3579166)
chr4 (410-450)||(7085066-7085106)
chr4 (402-450)||(12600894-12600942)
chr4 (402-450)||(37865761-37865809)
[»] chr5 (1 HSPs)
chr5 (402-450)||(27839116-27839164)
[»] chr8 (8 HSPs)
chr8 (404-450)||(11926882-11926928)
chr8 (401-438)||(36426311-36426348)
chr8 (406-450)||(11944884-11944928)
chr8 (401-439)||(10932740-10932778)
chr8 (402-439)||(25478248-25478285)
chr8 (402-439)||(29563289-29563326)
chr8 (402-439)||(32020064-32020101)
chr8 (402-450)||(6386581-6386629)
[»] chr1 (5 HSPs)
chr1 (404-450)||(26733571-26733617)
chr1 (403-450)||(41967961-41968008)
chr1 (412-450)||(13994187-13994225)
chr1 (402-439)||(32289467-32289504)
chr1 (402-450)||(28340415-28340463)
[»] chr7 (2 HSPs)
chr7 (406-450)||(8054414-8054458)
chr7 (401-439)||(7958634-7958672)
[»] chr2 (5 HSPs)
chr2 (402-450)||(30326368-30326416)
chr2 (401-439)||(13249448-13249486)
chr2 (402-439)||(9717229-9717266)
chr2 (406-450)||(7294428-7294472)
chr2 (402-450)||(7761610-7761658)
[»] scaffold0054 (1 HSPs)
scaffold0054 (404-439)||(19914-19949)
[»] chr6 (4 HSPs)
chr6 (401-439)||(15400672-15400710)
chr6 (401-439)||(15412459-15412497)
chr6 (401-439)||(15428053-15428091)
chr6 (402-450)||(11382069-11382117)
[»] scaffold0360 (1 HSPs)
scaffold0360 (401-450)||(13622-13671)
[»] scaffold0208 (1 HSPs)
scaffold0208 (402-439)||(2392-2429)
[»] chr3 (5 HSPs)
chr3 (401-450)||(14155491-14155540)
chr3 (402-439)||(29646072-29646109)
chr3 (402-450)||(1344738-1344786)
chr3 (402-450)||(21221391-21221439)
chr3 (402-450)||(53557826-53557874)
[»] scaffold0027 (1 HSPs)
scaffold0027 (402-450)||(15177-15225)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 30864568 - 30864816
Alignment:
Q  19 tgtttattgaggttgttggtggtgttgaggatgattaaataaagtgctgaggatgatttaaataaaatgtagtcctcggatatctgaagttacatattca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30864568 tgtttattgaggttgttggtggtgttgaggatgattaaataaagtgtcaaggatgatttaaataatatgtagtcctcggatatctgaagttacatattca 30864667  T
Q  119 attgatatgcctgttacttagaactatgatgaacttacttctattatagtggtttttctaaaactgttctaaaattttgaagataataaacgtaaagagt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  30864668 attgatatgcctgttacttagaactatgatgaacttacttctattatagtggtttttctaaaactgttctaaaattttgaag---ataaacgtaaagagt 30864764  T
Q  219 gagaggtgatgaaatctatctattttagctaatttatttcttggccatttag 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30864765 gagaggtgatgaaatctatctattttagctaatttatttcttggccatttag 30864816  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 399 - 478
Target Start/End: Original strand, 985287 - 985366
Alignment:
Q  399 gctggacaaaagactattttggtattttaaacaacttgtacacgagacaaaacctagtgagtgcaaccataatttcaaaa 478  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  985287 gctggacaaaagactattttgatattttaaacaacttgtacacgagacaaaatctagtgagtgcaaccataatttcaaaa 985366  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 9947936 - 9947985
Alignment:
Q  401 tggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    |||||||| ||||||||||||||||| || |||||||||  |||||||||    
T  9947936 tggacaaaggactattttggtattttgaataacttgtacgtgagacaaaa 9947985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 450
Target Start/End: Complemental strand, 56487319 - 56487282
Alignment:
Q  413 tattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||||||||||||||||||||| || |||||||    
T  56487319 tattttggtattttaaacaacttgtacgcgtgacaaaa 56487282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 436
Target Start/End: Original strand, 3579134 - 3579166
Alignment:
Q  404 acaaaagactattttggtattttaaacaacttg 436  Q
    |||||||||||||||||||||||| ||||||||    
T  3579134 acaaaagactattttggtattttagacaacttg 3579166  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 7085066 - 7085106
Alignment:
Q  410 gactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||||||||||||||||||| ||| |||||| ||||    
T  7085066 gactattttggtattttaaacaactcgtaaacgagataaaa 7085106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 12600894 - 12600942
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||  |||||||||||||||| |||||||||||  |||||||||    
T  12600894 ggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaa 12600942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 37865761 - 37865809
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||  |||||||||||||||| |||||||||||| | |||||||    
T  37865761 ggacaaaatgctattttggtattttagacaacttgtacatgggacaaaa 37865809  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 27839164 - 27839116
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||| |||||||||||||||| |||||||||||| |||||||||    
T  27839164 ggacaaaaggctattttggtattttagacaacttgtacatgagacaaaa 27839116  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 450
Target Start/End: Complemental strand, 11926928 - 11926882
Alignment:
Q  404 acaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||||    
T  11926928 acaaaagactattttggtattttagacaaattgtacatgagacaaaa 11926882  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 36426348 - 36426311
Alignment:
Q  401 tggacaaaagactattttggtattttaaacaacttgta 438  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  36426348 tggacaaaagactattttggtattttagacaacttgta 36426311  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 450
Target Start/End: Original strand, 11944884 - 11944928
Alignment:
Q  406 aaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||    
T  11944884 aaaagactattttggtattttagacaaattgtacatgagacaaaa 11944928  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Original strand, 10932740 - 10932778
Alignment:
Q  401 tggacaaaagactattttggtattttaaacaacttgtac 439  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  10932740 tggacaaaagactattttggtattttagacaaattgtac 10932778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 25478248 - 25478285
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtac 439  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  25478248 ggacaaaatactattttggtattttagacaacttgtac 25478285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 29563326 - 29563289
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtac 439  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  29563326 ggacaaaatactattttggtattttagacaacttgtac 29563289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 32020101 - 32020064
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtac 439  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  32020101 ggacaaaatactattttggtattttagacaacttgtac 32020064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 6386581 - 6386629
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||  |||||||||||||||| |||||||||||  |||||||||    
T  6386581 ggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaa 6386629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 450
Target Start/End: Original strand, 26733571 - 26733617
Alignment:
Q  404 acaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    |||||||||||||||||||||||| |||||||||||| ||| |||||    
T  26733571 acaaaagactattttggtattttagacaacttgtacatgaggcaaaa 26733617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 41968008 - 41967961
Alignment:
Q  403 gacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    |||||||| |||||||||||||||| |||||||||||  |||||||||    
T  41968008 gacaaaaggctattttggtattttagacaacttgtacgtgagacaaaa 41967961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Complemental strand, 13994225 - 13994187
Alignment:
Q  412 ctattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  13994225 ctattttggtattttagacaacttgtacatgagacaaaa 13994187  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 32289504 - 32289467
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtac 439  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  32289504 ggacaaaatgctattttggtattttaaacaacttgtac 32289467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 28340463 - 28340415
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||  |||||||||||||||| |||||||||||  |||||||||    
T  28340463 ggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaa 28340415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 450
Target Start/End: Complemental strand, 8054458 - 8054414
Alignment:
Q  406 aaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    |||||||||||||||||||||||| |||||||||  |||||||||    
T  8054458 aaaagactattttggtattttaaaaaacttgtacttgagacaaaa 8054414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Original strand, 7958634 - 7958672
Alignment:
Q  401 tggacaaaagactattttggtattttaaacaacttgtac 439  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  7958634 tggacaaaaaactattttggtattttagacaacttgtac 7958672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 30326416 - 30326368
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    |||||||| ||||||||||||||||| |||||||||||  |||||||||    
T  30326416 ggacaaaatactattttggtattttagacaacttgtacgtgagacaaaa 30326368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 13249486 - 13249448
Alignment:
Q  401 tggacaaaagactattttggtattttaaacaacttgtac 439  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  13249486 tggacaaaagtctattttgatattttaaacaacttgtac 13249448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 9717229 - 9717266
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtac 439  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  9717229 ggacaaaatactattttggtattttagacaacttgtac 9717266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 450
Target Start/End: Complemental strand, 7294472 - 7294428
Alignment:
Q  406 aaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    |||||||||||||||||||||  |||||||||||  |||||||||    
T  7294472 aaaagactattttggtattttttacaacttgtacgtgagacaaaa 7294428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 7761658 - 7761610
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||  |||||||||||||||| |||||||||||  |||||||||    
T  7761658 ggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaa 7761610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 439
Target Start/End: Original strand, 19914 - 19949
Alignment:
Q  404 acaaaagactattttggtattttaaacaacttgtac 439  Q
    |||||||||||||||||||||| |||||||||||||    
T  19914 acaaaagactattttggtatttcaaacaacttgtac 19949  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 15400710 - 15400672
Alignment:
Q  401 tggacaaaagactattttggtattttaaacaacttgtac 439  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  15400710 tggacaaaagactattttgatattttaaacaatttgtac 15400672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 15412497 - 15412459
Alignment:
Q  401 tggacaaaagactattttggtattttaaacaacttgtac 439  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  15412497 tggacaaaagactattttgatattttaaacaatttgtac 15412459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 15428091 - 15428053
Alignment:
Q  401 tggacaaaagactattttggtattttaaacaacttgtac 439  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  15428091 tggacaaaagactattttgatattttaaacaatttgtac 15428053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 11382069 - 11382117
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||  |||||||||||||||| |||||||||||  |||||||||    
T  11382069 ggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaa 11382117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 13671 - 13622
Alignment:
Q  401 tggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||| |||||||||||||| || |||||||||||| | |||||||    
T  13671 tggacaaaatactattttggtattctagacaacttgtacatgtgacaaaa 13622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 2429 - 2392
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtac 439  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  2429 ggacaaaaaactattttggtattttagacaacttgtac 2392  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 14155540 - 14155491
Alignment:
Q  401 tggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||||| ||||||| ||||||| |||||||||||  |||||||||    
T  14155540 tggacaaaagattattttgatattttagacaacttgtacttgagacaaaa 14155491  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 29646072 - 29646109
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtac 439  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  29646072 ggacaaaatgctattttggtattttaaacaacttgtac 29646109  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 1344786 - 1344738
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||  |||||||||||||||| |||||||||||  |||||||||    
T  1344786 ggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaa 1344738  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 21221439 - 21221391
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||  |||||||||||||||| |||||||||||  |||||||||    
T  21221439 ggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaa 21221391  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 53557874 - 53557826
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    ||||||||  |||||||||||||||| |||||||||||  |||||||||    
T  53557874 ggacaaaatgctattttggtattttagacaacttgtacgtgagacaaaa 53557826  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 15177 - 15225
Alignment:
Q  402 ggacaaaagactattttggtattttaaacaacttgtacacgagacaaaa 450  Q
    |||||||| |||||||| |||||||| |||||||||||  |||||||||    
T  15177 ggacaaaatactattttagtattttagacaacttgtacgtgagacaaaa 15225  T

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