View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6237_low_1 (Length: 628)
Name: NF6237_low_1
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6237_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 613
Target Start/End: Complemental strand, 15648969 - 15648358
Alignment:
| Q |
11 |
agaagcaaaggccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaagaaaatgtgggagcatctt |
110 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15648969 |
agaagcaaaagccaaaaatattttatcttgtgccataaatcaagatgattttaagagaatttcaagttgtcagacagccaagaaaatgtgggagcagctt |
15648870 |
T |
|
| Q |
111 |
gacaagttaagtgtttcatacattcaannnnnnnncaaaaactgatttatgttttcttagttgaaatattttattgattaaaaatttgcaaaacatatat |
210 |
Q |
| |
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||||||||||||||||||||||||||| |||| || ||| |||||| |||||||||||||||||| ||||||||||| | |||| |||||| |
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| T |
15648869 |
gacaagttaagtgtttcatacattcaatttttgttgaaaatcttgtttgtgtttttttagttgaaatattttatcgattaaaaatt-gtaaaatatatat |
15648771 |
T |
|
| Q |
211 |
tttctttgacagggaagtgacaacatctaatgtgaattctacacctccagtatcaccacaagcacccgcagcagctctatacgacactcctaatcttgag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15648770 |
tttctttgacagggaagtgacaacatctaatgtgaattctacacctccagtatcaccacaagcacccgcagcagctctatacgacactcctaatcttgag |
15648671 |
T |
|
| Q |
311 |
tttttagagcaaacaagtaaggttctccctctctcaa---attaatttgtagttttatgatacgaagcaagtagcatatctggtcgttaatatatagaac |
407 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |||| |||||||||| |
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| T |
15648670 |
tttttagaggaaacaagtaaggttctccctctctcaatttattaatttgtag--ttatgataccaagcaagtagcatatctggtggttagtatatagaac |
15648573 |
T |
|
| Q |
408 |
atagttacagaattcgctgccctatcaaagaaaccgcaaattggttcgcgaat---------cggtacttttgtgaaccggtttgtacaaatttgtgcgg |
498 |
Q |
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| T |
15648572 |
atagttacagaattcactgtcctaacaaggaaaccgcgaattggttcgcacataccggttcgcggtacttttgtgaaccggttcgtccaaattcttgtgg |
15648473 |
T |
|
| Q |
499 |
acattattatattagagaaggcgtctcaaattagcatatctgcacttctcttcttccaccatgttctgcaaaattgatttcccaatattatgtaaccgga |
598 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15648472 |
acattagtatattagagaaggcgtctcaaattagcatatctgcacttctcttcttccaccatgttctgcaaaattgatttcccaatattatgtaaccgga |
15648373 |
T |
|
| Q |
599 |
caccggttcaaatct |
613 |
Q |
| |
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||||||||||||||| |
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| T |
15648372 |
caccggttcaaatct |
15648358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 176 - 351
Target Start/End: Complemental strand, 15628267 - 15628091
Alignment:
| Q |
176 |
atattttattgattaaaaatttgcaaaacatatattttctttgacagggaagtgacaacatctaatgtgaattctacacctccagtatcaccacaagcac |
275 |
Q |
| |
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||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||| | | |
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| T |
15628267 |
atattttatcgattaaaaatt-gcaaaatatatattttctttgacagagaagtgacaacatctaatgtgaatactacacctccagtatcacaacaaacgc |
15628169 |
T |
|
| Q |
276 |
ccgcagcagctctatacgacactcctaatcttgagtttttagagcaaacaagtaaggttctcc--ctctctcaaatta |
351 |
Q |
| |
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| |||| |||||||||||||||||||||| ||||||||||||| ||||||||| || ||||| ||||||||||||| |
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| T |
15628168 |
cggcagtagctctatacgacactcctaatagtgagtttttagaggaaacaagtatggctctccttctctctcaaatta |
15628091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 15628412 - 15628291
Alignment:
| Q |
11 |
agaagcaaaggccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaagaaaatgtgggagcatctt |
110 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| |||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||| | ||| |
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| T |
15628412 |
agaagcaaaagccaaaaatattttatgttgtgccttaaatccagatgatcttaaaagaatttcaagttgtcagacagccaaggaaatgtgggaggagctt |
15628313 |
T |
|
| Q |
111 |
gacaagttaagtgtttcataca |
132 |
Q |
| |
|
|||| ||||||||||||||||| |
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|
| T |
15628312 |
gacaggttaagtgtttcataca |
15628291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 15658214 - 15658099
Alignment:
| Q |
11 |
agaagcaaaggccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaagaaaatgtgggagcatctt |
110 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| ||||||| ||||||| || | ||||||||||||||||||||| | ||| ||||||||||| | ||| |
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| T |
15658214 |
agaagcaaaagccaaaaatattttatattgtgccataaatccagatgatcttgaaagaatttcaagttgtcagacatcaaaggaaatgtgggaggagctt |
15658115 |
T |
|
| Q |
111 |
gacaagttaagtgttt |
126 |
Q |
| |
|
|||| |||| |||||| |
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| T |
15658114 |
gacaggttaggtgttt |
15658099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 15611331 - 15611204
Alignment:
| Q |
10 |
gagaagcaaaggccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaagaaaatgtgggagcatct |
109 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| |||| | ||||||| | | |||||||||||||| || || || ||| ||||||||||| | || |
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| T |
15611331 |
gagaagcaaaagccaaaaatattttatattgtgccttaaacccagatgatctaagaagaatttcaagttgccatacggcaaaggaaatgtgggaggagct |
15611232 |
T |
|
| Q |
110 |
tgacaagttaagtgtttcatacattcaa |
137 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
15611231 |
cgacaagttaagtgtttcatacattcaa |
15611204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 15523893 - 15523774
Alignment:
| Q |
11 |
agaagcaaaggccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaagaaaatgtgggagcatctt |
110 |
Q |
| |
|
||||| ||| || ||||||||||||| |||||| ||||||| ||||||| |||||||||||| |||||||||||| || ||| || | |||||| | ||| |
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| T |
15523893 |
agaagtaaaagctaaaaatattttatgttgtgccataaatccagatgatcttaagagaattttaagttgtcagacggcaaaggaagtatgggagaagctt |
15523794 |
T |
|
| Q |
111 |
gacaagttaagtgtttcatac |
131 |
Q |
| |
|
|||||||||||| |||||||| |
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| T |
15523793 |
gacaagttaagt-tttcatac |
15523774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 15523557 - 15523500
Alignment:
| Q |
205 |
atatattttctttgacagggaagtgacaacatctaatgtgaattctacacctccagta |
262 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| | ||||||| |||||||| |
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|
| T |
15523557 |
atatattgtctttgacagggaagtgacaacatctgatgtcagttctacatctccagta |
15523500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 15657646 - 15657587
Alignment:
| Q |
299 |
cctaatcttgagtttttagagcaaacaagtaaggttctccctctctcaaattaatttgta |
358 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| |||||||| ||| |||||||| |||||| |
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|
| T |
15657646 |
cctaaccttgagtttttagaggaaacaagtatggttctccatctttcaaattattttgta |
15657587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 343
Target Start/End: Complemental strand, 15536460 - 15536362
Alignment:
| Q |
245 |
aattctacacctccagtatcaccacaagcacccgcagcagctctatacgacactcctaatcttgagtttttagagcaaacaagtaaggttctccctctc |
343 |
Q |
| |
|
|||||||||||||||||||||| |||| | || || ||| |||||| || | ||||||| ||||||||||||| ||||||||| | ||||| ||||| |
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| T |
15536460 |
aattctacacctccagtatcacaacaaactccgacatcagacctatacaacgcgcctaatcctgagtttttagaggaaacaagtatgattctctctctc |
15536362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 15504333 - 15504216
Alignment:
| Q |
11 |
agaagcaaaggccaaaaatattttatcttgtgctataaatcaagatgattttaagagaatttcaagttgtcagacagccaagaaaatgtgggagcatctt |
110 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||| ||||| |||| || || ||| ||||||||| || ||||| || ||| ||||||||||| | ||| |
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| T |
15504333 |
agaagcaaaagccaaacatattttacgttgtgctttaaattcagattatcttgagaaaatttcaagatgccagacggcaaaggaaatgtgggagaagctt |
15504234 |
T |
|
| Q |
111 |
gacaagttaagtgtttca |
128 |
Q |
| |
|
| || ||||||| ||||| |
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|
| T |
15504233 |
gccaggttaagtttttca |
15504216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 15657743 - 15657686
Alignment:
| Q |
205 |
atatattttctttgacagggaagtgacaacatctaatgtgaattctacacctccagta |
262 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| |||| | ||||||| |||||||| |
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|
| T |
15657743 |
atatattgtctttgacagggaagtgactacatctgatgtcagttctacatctccagta |
15657686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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