View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6237_low_10 (Length: 371)
Name: NF6237_low_10
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6237_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 68 - 355
Target Start/End: Original strand, 10548823 - 10549111
Alignment:
| Q |
68 |
gagcaacaagcagacaaaagattccaaattttccctttcatatcttatatctgatggaaacacattcacacattcccctatacaattgaagaaaacacaa |
167 |
Q |
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| T |
10548823 |
gagcaacaagtagacaaaagactccaaattttccctttcatatcttatatctgatggaaacacattcacacattcccctatacaattgaagaaaacacaa |
10548922 |
T |
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| Q |
168 |
aaataagtaatcaatgttgatgttaaaacttnnnnnnnnntaatgtagacgacatgtatataaatattttcagttggtgtttctaattaaaagaagcaaa |
267 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10548923 |
aaataagtaatcaatgttgatgttaaaactt-aaaaaaaataatgtagacgacatgtatataaatattttcagttggtgtttctaattaaaagaagcaaa |
10549021 |
T |
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| Q |
268 |
aagtgtaaattaccaaacc--nnnnnnnnnggcaataagagttataagatactattactataagaaataatcaagggtaaataaccttct |
355 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10549022 |
aagagtaaattaccaaaccaaaaaaaaaaaggcaataagagttataagatactattactataagaaataatcaaggataaataaccttct |
10549111 |
T |
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