View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6237_low_12 (Length: 302)
Name: NF6237_low_12
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6237_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 3810195 - 3810448
Alignment:
| Q |
16 |
tgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaagacaatgc |
115 |
Q |
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| T |
3810195 |
tgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaagagaatgc |
3810294 |
T |
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| Q |
116 |
aaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgat |
215 |
Q |
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| T |
3810295 |
aaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttg-------------------acctccgaattcacccgat |
3810375 |
T |
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| Q |
216 |
ttgaatgtcttggacttgggctttttcaatgccattcagtctttacagcagaaagaatcaatgaagtcaattg |
288 |
Q |
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| T |
3810376 |
ttgaatgtcttggacttgggctttttcaatgccattcagtatttacagcagaaagaatcaatgaagtcaattg |
3810448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
| Q |
166 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
253 |
Q |
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| T |
1329564 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
1329651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
| Q |
147 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg |
235 |
Q |
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| T |
45489216 |
ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg |
45489304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
| Q |
166 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
253 |
Q |
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| T |
42539990 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
42539903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
| Q |
147 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt |
223 |
Q |
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| T |
8187133 |
ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt |
8187209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 40286990 - 40286926
Alignment:
| Q |
177 |
gacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggcttttt |
241 |
Q |
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| T |
40286990 |
gacattcgtttgacttttcaacctcctaattctcccgatttgaacgtattggatttaggcttttt |
40286926 |
T |
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