View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6237_low_16 (Length: 279)

Name: NF6237_low_16
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6237_low_16
NF6237_low_16
[»] chr6 (6 HSPs)
chr6 (1-269)||(34244528-34244794)
chr6 (155-256)||(13214078-13214179)
chr6 (203-257)||(30580057-30580111)
chr6 (70-121)||(29138613-29138664)
chr6 (155-190)||(30580103-30580138)
chr6 (21-57)||(5934207-5934243)
[»] chr4 (5 HSPs)
chr4 (155-269)||(15041693-15041807)
chr4 (155-269)||(15112617-15112731)
chr4 (155-269)||(15039964-15040078)
chr4 (155-269)||(15114346-15114460)
chr4 (155-269)||(16003450-16003564)
[»] chr3 (5 HSPs)
chr3 (155-269)||(34142934-34143048)
chr3 (155-254)||(27634221-27634320)
chr3 (155-254)||(34519038-34519137)
chr3 (189-269)||(8584406-8584486)
chr3 (161-260)||(19844798-19844896)
[»] chr7 (4 HSPs)
chr7 (155-269)||(10867934-10868048)
chr7 (155-269)||(10866217-10866331)
chr7 (155-236)||(20186072-20186153)
chr7 (21-57)||(43291270-43291306)
[»] chr8 (1 HSPs)
chr8 (182-266)||(30187814-30187898)
[»] scaffold0275 (1 HSPs)
scaffold0275 (154-260)||(3962-4068)
[»] scaffold0039 (1 HSPs)
scaffold0039 (21-57)||(111689-111725)
[»] chr1 (2 HSPs)
chr1 (21-57)||(30850169-30850205)
chr1 (21-57)||(32920811-32920847)
[»] chr2 (1 HSPs)
chr2 (19-57)||(18834604-18834642)
[»] chr5 (1 HSPs)
chr5 (160-230)||(33566867-33566933)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 34244528 - 34244794
Alignment:
Q  1 cccgatacgcatgcgtgtcgggtaccggtacttctccatgtgtggagtacccatgctatttatctgcacgttggtgttatacatttaaggtcttgtgatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  34244528 cccgatacgcatgcgtgtcgggtaccggtacttctccatgtgtggagtacccatgctatttat-tgcacgttggtgttatacatt-aaggtcttgtgatg 34244625  T
Q  101 caggcggtgattaagctctcatatcctcatggagttttgcttgtttgtggattgtgttgagataactagaattagttaaggtagttagagttggttaaat 200  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34244626 caggcggtgattaaggtctcttatcctcatggagttttgcttgtttgtggattgtgttgagataactagaattagttaaggtagttagagttggttaaat 34244725  T
Q  201 gttagttagagagaactatagttagttacaagtagttaaggtcattgaggtctataaaaggaccaacca 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34244726 gttagttagagagaactatagttagttacaagtagttaaggtcattgaggtctataaaaggaccaacca 34244794  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 13214179 - 13214078
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 254  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||| ||| ||||| |||||    
T  13214179 tgttgagataactagagttagttaaggtagttagggttggttaaattttagttcgagagaactatagttagttacaagtggttagggtaattgaagtcta 13214080  T
Q  255 ta 256  Q
    ||    
T  13214079 ta 13214078  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 30580111 - 30580057
Alignment:
Q  203 tagttagagagaactatagttagttacaagtagttaaggtcattgaggtctataa 257  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  30580111 tagttagagagaactatagttagttacaagtagttagggtaattgaggtctataa 30580057  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 29138613 - 29138664
Alignment:
Q  70 gttggtgttatacatttaaggtcttgtgatgcaggcggtgattaagctctca 121  Q
    ||||||||| ||||||||||||||| ||||||||||| | ||||| ||||||    
T  29138613 gttggtgttttacatttaaggtcttatgatgcaggcgataattaaactctca 29138664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 30580138 - 30580103
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagag 190  Q
    |||||||||||||||| |||||||||||||||||||    
T  30580138 tgttgagataactagagttagttaaggtagttagag 30580103  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 5934207 - 5934243
Alignment:
Q  21 ggtaccggtacttctccatgtgtggagtacccatgct 57  Q
    |||||||||||| |||||||| |||||||||||||||    
T  5934207 ggtaccggtactcctccatgtttggagtacccatgct 5934243  T

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Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 15041807 - 15041693
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 254  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15041807 tgttgagataactagagttagttaaggtagttagagttgattaaatgttagttagagagaactatagttagttacaagtagttagggtcattgaggtcta 15041708  T
Q  255 taaaaggaccaacca 269  Q
    |||||||||||||||    
T  15041707 taaaaggaccaacca 15041693  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 15112617 - 15112731
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 254  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15112617 tgttgagataactagagttagttaaggtagttagagttgattaaatgttagttagagagaactatagttagttacaagtagttagggtcattgaggtcta 15112716  T
Q  255 taaaaggaccaacca 269  Q
    |||||||||||||||    
T  15112717 taaaaggaccaacca 15112731  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 15040078 - 15039964
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 254  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  15040078 tgttgagataactagagttagttaaggtagttagagttgattaaatgttagttagagagaacaatagttagttacaagtagttagggtcattgaggtcta 15039979  T
Q  255 taaaaggaccaacca 269  Q
    |||||||||||||||    
T  15039978 taaaaggaccaacca 15039964  T

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Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 15114346 - 15114460
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 254  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  15114346 tgttgagataactagagttagttaaggtagttagagttgattaaatgttagttagagagaacaatagttagttacaagtagttagggtcattgaggtcta 15114445  T
Q  255 taaaaggaccaacca 269  Q
    |||||||||||||||    
T  15114446 taaaaggaccaacca 15114460  T

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Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 16003450 - 16003564
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 254  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||||||||    
T  16003450 tgttgagataactagagttagttaaggtagttagagttggttaaatgtgagttagaaagaactatagttagttacaagtagttagggtaattgaggtcta 16003549  T
Q  255 taaaaggaccaacca 269  Q
    |||||||||||||||    
T  16003550 taaaaggaccaacca 16003564  T

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Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 34142934 - 34143048
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 254  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| ||||    
T  34142934 tgttgagataactagagttagttaaggtagttagagttggttaaatgttagttagagagagctatagttagttacaagtagttagggtaattgagttcta 34143033  T
Q  255 taaaaggaccaacca 269  Q
    |||||||||||||||    
T  34143034 taaaaggaccaacca 34143048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 27634320 - 27634221
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 254  Q
    |||||||||||||||| ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  27634320 tgttgagataactagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 27634221  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 34519137 - 34519038
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 254  Q
    |||||||||||||||| ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  34519137 tgttgagataactagagttagttaaggtggttagagttgcttgaatgttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 34519038  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 8584406 - 8584486
Alignment:
Q  189 agttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtctataaaaggaccaacca 269  Q
    |||||| ||||  ||||||| ||||||||||||||||||||  ||||||| |   ||||||||||||||||||||||||||    
T  8584406 agttgggtaaaaattagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaacca 8584486  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 19844896 - 19844798
Alignment:
Q  161 gataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaa--gtagttaag-gtcattgaggtctataa 257  Q
    |||||||| | ||||| ||||||||||||||| ||||||||||||||||| | |    |||||||||||||  || |||||| || ||||||||||||||    
T  19844896 gataactatagttagtaaaggtagttagagttagttaaatgttagttagaaaaa----tagttagttacaaatgtggttaagtgtaattgaggtctataa 19844801  T

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Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 10867934 - 10868048
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||| ||| |||||||||||    
T  10867934 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttaaaaggaactatagttagttacaactagttagggtaattgaggtcta 10868033  T
Q  255 taaaaggaccaacca 269  Q
    |||||||||||||||    
T  10868034 taaaaggaccaacca 10868048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 10866217 - 10866331
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtcta 254  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||| ||| |||||| | ||    
T  10866217 tgttaagataactagaattagttaaggtagttagagttggttaaatgttagttagaatgaactatagttagttacaactagttagggtaattgagattta 10866316  T
Q  255 taaaaggaccaacca 269  Q
    |||||||||||||||    
T  10866317 taaaaggaccaacca 10866331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 20186072 - 20186153
Alignment:
Q  155 tgttgagataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttacaagtagt 236  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20186072 tgttgagataactagagttagttaaggtagttagagttggttaaatgttagttagagagaactatagtttgttacaagtagt 20186153  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 43291270 - 43291306
Alignment:
Q  21 ggtaccggtacttctccatgtgtggagtacccatgct 57  Q
    ||||||||||||||||||||| |||||||||||||||    
T  43291270 ggtaccggtacttctccatgtttggagtacccatgct 43291306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 30187898 - 30187814
Alignment:
Q  182 tagttagagttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtctataaaaggaccaa 266  Q
    |||||| |||||||||||  ||||||| ||||||||||| ||||||||| ||||||||||  |||||||||||||||||||||||    
T  30187898 tagttatagttggttaaaaattagttacagagaactataattagttacatgtagttaaggaaattgaggtctataaaaggaccaa 30187814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 4068 - 3962
Alignment:
Q  154 gtgttgagataactagaattagttaa-ggtagttagagttggttaaatgttagttagagagaactatagttagttacaa--gtagttaag-gtcattgag 249  Q
    |||||||||||| |||| |||||||| || ||||||||||||||||||||||||||||    |||||||||||| |||   || |||||| || ||||||    
T  4068 gtgttgagataattagagttagttaaaggcagttagagttggttaaatgttagttaga----actatagttagtaacacatgtggttaagtgtaattgag 3973  T
Q  250 gtctataaaag 260  Q
    |||||||||||    
T  3972 gtctataaaag 3962  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 111689 - 111725
Alignment:
Q  21 ggtaccggtacttctccatgtgtggagtacccatgct 57  Q
    ||||||||||||||||||||| |||||||||||||||    
T  111689 ggtaccggtacttctccatgtttggagtacccatgct 111725  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 30850169 - 30850205
Alignment:
Q  21 ggtaccggtacttctccatgtgtggagtacccatgct 57  Q
    ||||||||||||||||||||| |||||||||||||||    
T  30850169 ggtaccggtacttctccatgtttggagtacccatgct 30850205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 32920811 - 32920847
Alignment:
Q  21 ggtaccggtacttctccatgtgtggagtacccatgct 57  Q
    ||||||||||||||||||||| |||||||||||||||    
T  32920811 ggtaccggtacttctccatgtttggagtacccatgct 32920847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 18834642 - 18834604
Alignment:
Q  19 cgggtaccggtacttctccatgtgtggagtacccatgct 57  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  18834642 cgggtaccggtacttctccatgtttggagtatccatgct 18834604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 33566933 - 33566867
Alignment:
Q  160 agataactagaattagttaaggtagttagagttggttaaatgttagttagagagaactatagttagttaca 230  Q
    ||||||||| | || || ||| ||||||||||| ||||||||||||||    |||||||||||||||||||    
T  33566933 agataactatagttggtaaagctagttagagttagttaaatgttagtt----agaactatagttagttaca 33566867  T

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