View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6237_low_2 (Length: 589)
Name: NF6237_low_2
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6237_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 77 - 572
Target Start/End: Original strand, 40296498 - 40296993
Alignment:
| Q |
77 |
ctaatccaatggtttagtttgcaaaggagaattgagaattttgtgacacagtggtaggtaacaatgaaggggacgaagcattgtctcccattccataata |
176 |
Q |
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| T |
40296498 |
ctaatccaatggtttagtttgcaaaggagaattgagaattttgtgacacagtggtaggtaacaatgaaggggacgaagcattgtctcccattccataata |
40296597 |
T |
|
| Q |
177 |
ctactaataataatcataatctagattgttagttttaattagttttgatcttgcagatactatagttcgttttcatttcccacaatgaccaagtgttctc |
276 |
Q |
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| T |
40296598 |
ctactaataataaccataatctagattgttagttttaatttgttttgatcttgcagatactatagttcattttcatttctcacaatgaccaagtgttctc |
40296697 |
T |
|
| Q |
277 |
atcagagtcactccctatacatatataaaggcatataaagttcttatgtcacataaaccagacgccaatataaaaacacttgatacccttctaagttcta |
376 |
Q |
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| T |
40296698 |
atcagagtcactccttatacatatataaaggcatataaagttcttatgtcacataaaccagacgccaatataaaaacacttgatacccttctaagttcta |
40296797 |
T |
|
| Q |
377 |
actgcttataacttggttcttgatctacgaagtagtccaggtaaaactaccatgtaaacaaataatttaaaaataagatagaaataggaaatgaaggtaa |
476 |
Q |
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| T |
40296798 |
actgcttataacttggttcttgatctacgaagtagtccaggtaaaactaccatgtaaacaaataatttaaaaataagatagaaataggaaatgaaggtaa |
40296897 |
T |
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| Q |
477 |
cctctttaagatccgctgaagttaaaatatcaaaatcttttggtgtttgccttagtatcatgtcccggacacaacctcctacaaggtaaacattat |
572 |
Q |
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| T |
40296898 |
cctctttaagatccgctgaagttaaaatatcaaaatcttttggtgtttgccttagtatcatgtcccggacacaacctcctacaaggtaaacattat |
40296993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 40296429 - 40296457
Alignment:
| Q |
9 |
ataatactgttgggtctatgcacatgtca |
37 |
Q |
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| T |
40296429 |
ataatactgttgggtctatgcacatgtca |
40296457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 473 - 569
Target Start/End: Original strand, 45157091 - 45157187
Alignment:
| Q |
473 |
gtaacctctttaagatccgctgaagttaaaatatcaaaatcttttggtgtttgccttagtatcatgtcccggacacaacctcctacaaggtaaacat |
569 |
Q |
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| T |
45157091 |
gtaacctcttttagctcagctgaagttataatatcaaagtcctttggtgtttgctttagaataagatcccgtacacaacctcctacaaggtatacat |
45157187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 54847319 - 54847282
Alignment:
| Q |
266 |
caagtgttctcatcagagtcactccctatacatatata |
303 |
Q |
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| T |
54847319 |
caagtgttctcattagagtcactccctatatatatata |
54847282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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