View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6237_low_20 (Length: 249)
Name: NF6237_low_20
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6237_low_20 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 143719 - 143494
Alignment:
| Q |
6 |
agcagcacagaccatgtaaccttcggatggatcaagctcccacctccagaaatctgtaacatcaaactgcaaagaaacagtacaaagtaatatgatacac |
105 |
Q |
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| T |
143719 |
agcagcacaaaccgtgtaaccttcggatggatcaagctcccacctccagaaatctgtaacatcaaactgcaaagaaacagcacaaagtaatatgatacac |
143620 |
T |
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| Q |
106 |
tcctgtaacatctcctccttctaaaaataaatattagtttcatttaatggtcttctaaataaaaagtaatnnnnnnnnnnnnngaggttgtattttctaa |
205 |
Q |
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| T |
143619 |
tcctgtaacatctcctccttctaaaaataaatattagtttcatttaatggtcttctaaattaaaagtaat--aaaaaaacaaagaggttgtattttctaa |
143522 |
T |
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| Q |
206 |
attgtctttcatgaaaaattgttctata |
233 |
Q |
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| T |
143521 |
attgtctttcatgaaaaattgttctata |
143494 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 10362334 - 10362398
Alignment:
| Q |
57 |
atctgtaacatcaaactgcaaagaaacagtacaaagtaatatgatacactcctgtaacatctcct |
121 |
Q |
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| T |
10362334 |
atctgtcacattaaactgcaaagaaacactacgaagtaaaatgatacactcccctagcatctcct |
10362398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 34187060 - 34186970
Alignment:
| Q |
34 |
ggatcaagctcccacctccagaaatctgtaacatcaaactgcaaagaaacagtacaaagtaatatgatacactcctgtaacatctcctcct |
124 |
Q |
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| T |
34187060 |
ggatccagctgccacctccaagaatctgtaaaattaaactgcaaagtaacactgcgaagtaatgtaacacactcccgtaacatatcctcct |
34186970 |
T |
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