View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6237_low_22 (Length: 215)
Name: NF6237_low_22
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6237_low_22 |
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| [»] scaffold0734 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 11174214 - 11174398
Alignment:
| Q |
18 |
cattctttcagagtctttgaatgcaacaaaagaaggtgttgttcttttcccttggtcgttcactattatctctacctctccattcttacacactgcaaca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
11174214 |
cattctttcagagtctttgaatgcaacaaaagaaggtgttgttctcttccctaggtcgttcactattatatctatctctccattcttacacactgcaaca |
11174313 |
T |
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| Q |
118 |
caagaataggttgttcctaggtcgattcctattgctactttcttacctcttcctgacatttctttctttgcaatcactcacaggt |
202 |
Q |
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| T |
11174314 |
caagaataggttgttcctaggtcgattcctattgctactttcttacctcttcctgacatttctttctttgcaatcactcacaggt |
11174398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 11278623 - 11278804
Alignment:
| Q |
18 |
cattctttcagagtctttgaatgcaacaaaagaaggtgttgttcttttcccttggtcgttcactattatctctacctctccattcttacacactgcaaca |
117 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11278623 |
cattctttcagagtttttgaatgcaacacaagaaggtgttgttctgttcccttggtcgttcactattatctctacctctcctttcttacacactgcaaca |
11278722 |
T |
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| Q |
118 |
caagaataggttgttcctaggtcgattcctattgctactttcttacctcttcctgacatttctttctttgcaatcactcaca |
199 |
Q |
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| T |
11278723 |
caagaataggttgttcctaggtcgattcctattgcaactttcttacctattcctgacatttctttctttgcaatcactcaca |
11278804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 11211744 - 11211930
Alignment:
| Q |
19 |
attctttcagagtctttgaatgcaacaaaagaaggtgttgttcttttcccttggtcgttcactattatctctacctctccattct---tacacactgcaa |
115 |
Q |
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||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||| |
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| T |
11211744 |
attctttcatagtttttgaatgcaacacaagaaggtgttgttctgttcccttggtcgttcactattatatgtacctctccattcttcttacacactgcaa |
11211843 |
T |
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| Q |
116 |
cacaagaataggttgttcctaggtcgattcctattgctactttcttacctcttcc---tgacatttctttctttgcaatcactcaca |
199 |
Q |
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| T |
11211844 |
cacaagaataggttgttcctaggtcgattcctattgcaactttcttacctattcctgatgacatttctttctttgcaatcactcaca |
11211930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 11134330 - 11134514
Alignment:
| Q |
18 |
cattctttcagagtctttgaatgcaacaaaagaaggtgttgttcttttcccttggtcgttcactattatctctacctctccattcttacacactgcaaca |
117 |
Q |
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|||||||| |||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||| ||||| | ||||||||| || |
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| T |
11134330 |
cattctttgagagtcagtgaatgcaacataagaaggtgttgttctattcccttggtcgttcactatcatctcaaccctatcattcctccacactgcagca |
11134429 |
T |
|
| Q |
118 |
caagaataggttgttcctaggtcgattcctattgctactttcttacctcttcctgacatttctttctttgcaatcactcacaggt |
202 |
Q |
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| T |
11134430 |
caagaataagttgttcctaagtcgattcctattgcaactttctcaccttttcctggcatttctttctttgcaatcactcacaggt |
11134514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 11159667 - 11159834
Alignment:
| Q |
18 |
cattctttcagagtctttgaatgcaacaaaagaaggtgttgttcttttcccttggtcgttcactattatctctacctctccattcttacacactgcaaca |
117 |
Q |
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|||||||| |||||| |||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || || |||||| |
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| T |
11159667 |
cattctttgagagtcagtgaaggcaacataagaaggtgttgttctattcccttggtcgttcactattatctctaccttatcattcttccatacagcaaca |
11159766 |
T |
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| Q |
118 |
caagaataggttgttcctaggtcgattcctattgctactttcttacctcttcctgacatttctttctt |
185 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| || | || ||| ||||||| |||| |
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| T |
11159767 |
caagaataggttgttcctaggtcgattcctattgcaactttctcactttttactgtcatttctctctt |
11159834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 11198219 - 11198386
Alignment:
| Q |
18 |
cattctttcagagtctttgaatgcaacaaaagaaggtgttgttcttttcccttggtcgttcactattatctcta-cctctccattcttacacactgcaac |
116 |
Q |
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||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||||||| ||| ||||||| ||| || || | | || || ||||| |
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| T |
11198219 |
cattctttcagagtcagtgaaggcaacataagaaggtgttgttctattcccttggtcgttcggtatgatctctatcctatc-atgcctccatacagcaac |
11198317 |
T |
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| Q |
117 |
acaagaataggttgttcctaggtcgattcctattgctactttcttacctcttcctgacatttctttctt |
185 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||| || ||| ||||||| |||| |
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| T |
11198318 |
acaagaataggttgttcctaggtcgattcctattgcaactttctcaccttttactgtcatttctctctt |
11198386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0734
Description:
Target: scaffold0734; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 4837 - 4910
Alignment:
| Q |
124 |
taggttgttcctaggtcgattcctattgctactttcttacctcttcctgacatttctttctttgcaatcactca |
197 |
Q |
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| T |
4837 |
taggttgttcctaggtcgattcctattgccacttttttacctattcctgacatttctttctttgcaatcactca |
4910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 7543321 - 7543363
Alignment:
| Q |
35 |
tgaatgcaacaaaagaaggtgttgttcttttcccttggtcgtt |
77 |
Q |
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|||| ||||||||||||||||||||||| || ||||||||||| |
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| T |
7543321 |
tgaaagcaacaaaagaaggtgttgttctgttgccttggtcgtt |
7543363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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