View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6237_low_23 (Length: 212)
Name: NF6237_low_23
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6237_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 43142716 - 43142912
Alignment:
| Q |
1 |
atgcttgatgtatgcaggatgatgttgatgttaggattgttgtagctggtattatcaacaacttgttcacaatcaattggtatggtattttactgacgta |
100 |
Q |
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| T |
43142716 |
atgcttgatgtatgcaggatgatgttgatgttaggattgttgtagctggtat-atcaacaacttgttcacaatcaattggtatggtattttactgacgta |
43142814 |
T |
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| Q |
101 |
tattttgatagtctttttaaatataaatataaattactattttattgacaattccttacatttatttaatgtcaatttaaatctatgttgaaaatggtga |
200 |
Q |
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| T |
43142815 |
tattttgatagtctttt------taaatataaattactattttattgacaattccttacatttatttaatgtcaatttaaatctatgttgaaaatggtga |
43142908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 43154672 - 43154785
Alignment:
| Q |
5 |
ttgatgtatgcaggatgatgttgatgttaggattgttgtagctggtattatcaacaacttg-----------ttcacaatcaattggtatggtattttac |
93 |
Q |
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| T |
43154672 |
ttgatatatgcaggatgatgttgatgttaaggttgttgtagctggt-ttgtcaacaacttgtagtcaaaaaattcacaatcaattggtatgttattttac |
43154770 |
T |
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| Q |
94 |
tgacgtatattttgata |
110 |
Q |
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| T |
43154771 |
tgac--atattttgata |
43154785 |
T |
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